Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018825.1 Corchorus olitorius cultivar O-4 contig18858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50767

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
915--2561
329
5.0
330
79
7
1553
33
14
16
35
1.89
5012--5166
51
3.0
51
88
0
211
36
49
7
6
1.57
5237--5754
48
11.1
48
91
4
685
19
44
6
29
1.76
6113--6242
60
2.2
60
88
0
188
37
17
16
28
1.91
6289--6448
60
2.7
60
84
1
212
29
16
16
37
1.91
7820--7938
54
2.2
54
87
0
166
34
50
7
7
1.59
8222--8357
42
3.1
42
85
6
155
11
51
5
30
1.62
14531--14569
18
2.1
19
95
4
71
17
5
51
25
1.66
22752--23569
48
17.2
48
76
7
306
24
50
3
22
1.65
22738--23578
96
8.8
96
82
4
662
24
50
3
22
1.64
22989--23584
95
6.3
96
84
4
690
26
50
2
20
1.62
23429--23459
15
2.1
15
93
0
53
16
54
0
29
1.42
23533--23562
15
2.0
15
93
0
51
13
63
0
23
1.29
22920--23584
48
14.0
48
80
4
598
25
50
2
21
1.62
22920--23584
95
7.0
96
81
5
643
25
50
2
21
1.62
26387--27261
48
18.1
48
83
2
820
21
48
4
25
1.68
26995--27358
48
7.6
48
73
6
184
27
49
1
21
1.60
26759--27358
144
4.2
144
81
3
377
24
49
3
23
1.65
36597--36628
6
5.7
6
85
14
50
15
12
0
71
1.14
37010--37272
131
2.0
133
92
1
440
42
11
13
32
1.79
38043--38074
6
5.3
6
100
0
64
0
18
0
81
0.70
41060--41098
20
2.0
20
94
0
69
38
2
7
51
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41062--41106
20
2.3
20
88
3
65
42
2
8
46
1.47
41315--41352
20
1.9
20
100
0
76
23
0
23
52
1.47
41315--41359
20
2.2
20
92
4
72
28
0
20
51
1.48
50631--50691
10
6.5
10
70
21
51
40
0
1
57
1.08

Tables:   1

The End!