Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018827.1 Corchorus olitorius cultivar O-4 contig18860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21718

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3472--3846
201
1.9
201
100
0
750
39
11
20
28
1.88
4852--4883
13
2.5
13
95
5
57
59
0
0
40
0.97
5459--5538
27
3.0
27
85
7
101
31
15
23
30
1.95
9933--9978
18
2.5
19
77
19
53
32
8
26
32
1.87
12434--13504
30
35.8
30
83
1
1018
22
7
43
26
1.79
15839--15879
2
20.5
2
100
0
82
48
0
0
51
1.00
16481--16585
44
2.4
46
80
6
110
42
15
7
34
1.75
16520--16717
22
9.0
22
69
7
125
36
16
10
35
1.84
16517--17006
44
11.5
44
69
12
193
34
15
10
38
1.83
16555--16714
66
2.4
66
80
0
176
35
17
11
36
1.86
16757--17005
22
11.5
22
71
13
153
34
14
11
40
1.81
16794--16957
66
2.6
62
79
10
179
33
14
12
39
1.83
16919--17006
45
2.0
44
86
2
122
36
14
12
36
1.84
16969--17014
22
2.1
22
84
8
58
36
4
10
47
1.58
17029--17054
2
13.0
2
100
0
52
50
0
0
50
1.00
17054--17117
22
2.9
22
72
4
67
39
17
7
35
1.78

Tables:   1

The End!