Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018829.1 Corchorus olitorius cultivar O-4 contig18862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31446

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1100--1174
3
25.0
3
100
0
150
33
0
0
66
0.92
1239--1267
15
1.9
15
100
0
58
20
13
24
41
1.89
1411--1461
24
2.1
24
85
7
68
50
0
9
39
1.35
3866--4049
98
1.9
99
87
2
273
51
4
10
33
1.57
7008--7057
5
10.8
5
83
16
72
22
20
0
58
1.40
7505--7737
118
2.0
118
93
0
403
37
22
7
32
1.83
8395--8488
45
2.2
43
86
7
129
39
21
4
35
1.73
10990--11099
36
3.2
36
75
15
140
25
7
20
47
1.75
11775--11834
22
2.7
22
84
0
75
33
11
11
43
1.77
15324--15421
48
2.0
48
84
3
126
26
6
47
19
1.72
16271--16317
23
2.1
22
84
11
60
31
2
12
53
1.51
17960--18015
28
2.0
28
85
0
76
30
17
8
42
1.80
19505--19690
48
3.9
48
73
2
131
25
4
48
20
1.69
19504--19731
96
2.4
96
78
0
240
24
4
48
22
1.69
19655--19788
48
2.8
48
77
0
142
23
5
44
27
1.74
19466--19779
144
2.2
143
77
5
312
23
4
47
23
1.70
25806--26047
22
11.0
22
68
11
102
39
15
11
34
1.83
25806--25930
66
1.9
67
85
11
177
40
15
10
34
1.81
26160--26413
22
11.4
22
71
16
123
35
14
10
39
1.81
26248--26395
66
2.2
67
80
9
169
38
11
12
37
1.80
26275--26413
66
2.1
66
83
9
176
33
12
13
40
1.82
27350--27391
21
2.0
21
85
4
57
33
11
0
54
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28599--28894
48
6.2
48
74
3
204
24
5
48
21
1.70
28598--28927
96
3.4
96
74
6
267
24
4
47
22
1.70
28599--28927
48
6.9
48
74
6
157
24
4
48
22
1.70
30120--30159
21
2.1
19
86
13
55
30
17
32
20
1.95
30985--31432
42
10.8
40
75
11
266
36
15
15
33
1.88
30985--31376
42
9.5
41
75
10
273
35
15
15
33
1.89
31012--31295
81
3.5
81
78
9
242
37
15
14
33
1.87
31030--31429
129
3.2
128
82
6
405
35
15
14
34
1.88
31066--31432
86
4.3
83
75
12
295
35
14
14
34
1.87
31320--31432
44
2.6
44
81
10
144
36
15
13
35
1.86

Tables:   1

The End!