Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001883.1 Corchorus olitorius cultivar O-4 contig01883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39


Found at i:606 original size:14 final size:15

Alignment explanation


    Indices: 581--617  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        571 TTTGCTTTGT

                            
        581 TTTCTAGTTTAATTG-
          1 TTTCT-GTTTAATTGC

                           
        596 TTTCTGTTTAATTGC
          1 TTTCTGTTTAATTGC

                   
        611 TTTCTGT
          1 TTTCTGT

        618 CAACCTCTGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  14    9  0.43
  15   12  0.57

ACGTcount: A:0.14, C:0.11, G:0.14, T:0.62


Consensus pattern (15 bp):   
TTTCTGTTTAATTGC

Done.