Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018830.1 Corchorus olitorius cultivar O-4 contig18863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13084
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34


Found at i:3322 original size:26 final size:26

Alignment explanation


    Indices: 3288--3349  Score: 88
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       3278 GATAAATGGC

                                       
       3288 CAAACTGCTAATACCTAATCACTAATG
          1 CAAA-TGCTAATACCTAATCACTAATG

                     *        *       
       3315 CAAATGCTAGTACCTAATTACTAATG
          1 CAAATGCTAATACCTAATCACTAATG

             *       
       3341 CGAATGCTA
          1 CAAATGCTA

       3350 TTTTAATATA


Statistics
Matches: 32,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  26   28  0.88
  27    4  0.12

ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27


Consensus pattern (26 bp):   
CAAATGCTAATACCTAATCACTAATG
Done.