Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018832.1 Corchorus olitorius cultivar O-4 contig18865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Found at i:1451 original size:18 final size:18

Alignment explanation


    Indices: 1428--1465  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1418 AGTGTAGTTA

                              
       1428 AAGGGTTTGTGTTAACTC
          1 AAGGGTTTGTGTTAACTC

                              
       1446 AAGGGTTTGTGTTAACTC
          1 AAGGGTTTGTGTTAACTC

              
       1464 AA
          1 AA

       1466 ATGAACTTAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37


Consensus pattern (18 bp):   
AAGGGTTTGTGTTAACTC
Done.