Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018839.1 Corchorus olitorius cultivar O-4 contig18872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95524

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--54
2
27.0
2
100
0
108
0
50
0
50
1.00
3029--3073
22
2.0
23
86
4
65
55
11
17
15
1.68
6953--7051
29
3.6
28
76
8
105
47
21
9
22
1.78
9422--9463
22
1.9
22
90
0
66
45
26
14
14
1.83
10675--10928
129
2.0
130
87
4
370
50
1
9
37
1.45
23698--23771
10
8.0
10
70
19
54
56
1
0
41
1.07
23703--23771
29
2.6
25
86
9
84
57
1
0
40
1.07
23710--23767
22
2.7
21
80
17
73
60
1
0
37
1.07
23698--23765
7
9.6
7
75
20
61
55
1
0
42
1.08
23731--23772
18
2.4
17
88
11
59
61
0
0
38
0.96
24845--24885
15
2.8
15
92
3
66
0
12
4
82
0.81
25003--25064
30
2.1
30
96
3
117
50
3
9
37
1.52
35182--35224
2
21.5
2
86
9
61
46
0
2
51
1.13
35182--35224
21
2.0
22
86
8
63
46
0
2
51
1.13
35175--35222
15
3.2
15
91
5
71
43
0
4
52
1.20
35183--35221
13
3.0
13
88
0
60
48
0
2
48
1.15
49981--50014
17
2.0
17
88
11
52
41
2
2
52
1.31
58132--58163
2
16.0
2
93
0
55
46
3
0
50
1.17
58809--58885
29
2.7
29
91
0
127
35
28
12
23
1.92
59560--59717
79
2.0
79
98
0
307
32
16
22
29
1.95
62148--62176
15
2.0
15
93
6
51
48
17
0
34
1.47
62713--62744
15
2.1
15
100
0
64
40
18
12
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63443--63504
32
1.9
33
96
3
117
40
12
22
24
1.89
70810--70869
31
1.9
31
86
6
86
20
10
18
51
1.74
74033--74063
16
1.9
16
93
0
53
83
0
16
0
0.64
79831--79990
81
2.0
81
100
0
320
33
21
23
22
1.98
80345--80410
27
2.5
26
80
9
62
42
7
1
48
1.40
80345--80599
126
2.0
128
90
1
406
40
8
3
47
1.52
80471--80536
27
2.4
27
85
7
80
42
7
3
46
1.47
80471--80585
27
4.3
27
67
20
78
39
8
3
48
1.51
82430--82518
44
2.0
44
88
0
133
25
17
7
48
1.75
85817--85846
11
2.7
11
94
0
51
20
33
30
16
1.94
90131--90158
2
14.0
2
100
0
56
50
0
50
0
1.00
94743--94768
12
2.2
12
100
0
52
38
7
0
53
1.30
94831--94892
22
2.8
22
78
7
63
35
16
11
37
1.84
94860--94908
22
2.2
22
82
7
55
38
12
8
40
1.72
95441--95471
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!