Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018844.1 Corchorus olitorius cultivar O-4 contig18877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107840

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4749--4847
3
33.0
3
100
0
198
66
0
0
33
0.92
5623--5790
38
4.4
38
92
0
264
14
39
41
4
1.67
5847--5877
2
15.5
2
93
0
53
54
0
0
45
0.99
7030--7074
14
3.5
12
84
9
54
31
0
11
57
1.33
10764--10798
2
17.5
2
100
0
70
48
0
0
51
1.00
13272--13309
15
2.4
16
86
4
51
60
13
10
15
1.59
13913--13978
33
2.0
33
100
0
132
33
12
18
36
1.88
19683--19749
28
2.3
27
80
12
71
26
13
10
49
1.74
19747--19787
22
1.9
22
90
5
66
65
14
4
14
1.42
20176--20213
15
2.4
16
86
4
51
60
13
10
15
1.59
23995--24311
56
5.9
56
90
5
469
37
10
28
23
1.88
24609--24706
28
3.5
28
83
6
117
16
15
25
42
1.87
26166--26298
39
3.4
39
94
0
212
34
26
6
32
1.83
34381--34443
22
2.9
21
85
4
72
28
22
7
41
1.82
34544--34773
85
2.7
85
77
7
212
36
14
10
39
1.80
34658--34797
63
2.2
63
80
5
156
33
16
8
41
1.79
34414--35435
44
23.2
44
69
12
323
37
16
10
36
1.82
34436--34797
22
16.5
21
70
13
160
37
14
10
37
1.81
34431--34969
22
24.5
22
66
15
147
37
15
10
36
1.82
35063--35123
22
2.8
22
87
0
86
36
19
9
34
1.85
35139--35435
22
13.7
21
70
10
136
36
14
11
37
1.82
35250--35387
66
2.1
65
81
4
152
39
12
11
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35270--35417
65
2.3
66
84
1
181
37
14
10
37
1.80
35294--35430
43
3.2
43
83
9
170
38
14
8
37
1.77
35426--35475
22
2.2
22
85
7
64
44
16
8
32
1.76
35441--35517
22
3.7
21
75
15
70
44
16
5
33
1.70
40257--40282
2
13.0
2
100
0
52
0
50
0
50
1.00
51807--51902
21
4.6
21
92
2
149
26
27
16
30
1.97
58183--58299
21
5.6
21
93
2
182
26
27
16
29
1.97
60854--60893
15
2.7
14
84
7
53
80
2
17
0
0.83
67089--67148
3
20.0
3
100
0
120
66
0
33
0
0.92
69755--69779
11
2.3
11
100
0
50
92
0
0
8
0.40
71188--71273
33
2.7
32
78
8
84
24
9
23
43
1.83
71230--71320
32
2.8
32
85
8
112
26
9
21
41
1.84
71233--71324
33
2.8
31
84
9
112
26
9
22
41
1.85
73130--73242
21
5.4
21
89
2
149
29
17
26
26
1.98
74284--74308
11
2.3
11
100
0
50
92
0
0
8
0.40
75717--75802
33
2.7
32
78
8
84
24
9
23
43
1.83
75759--75849
32
2.8
32
85
8
112
26
9
21
41
1.84
75762--75853
33
2.8
31
84
9
112
26
9
22
41
1.85
77658--77770
21
5.4
21
89
2
149
29
17
26
26
1.98
78397--78746
175
2.0
175
98
0
682
32
16
22
28
1.96
80580--80616
2
18.5
2
100
0
74
51
0
0
48
1.00
86985--87081
45
2.2
45
90
1
151
36
3
22
38
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89588--89632
3
15.3
3
81
4
56
66
0
33
0
0.92
89662--89701
18
2.2
19
95
4
73
57
0
15
27
1.38
91066--91090
12
2.1
12
100
0
50
52
8
16
24
1.70
94804--94885
39
2.1
39
95
0
146
53
2
20
23
1.57
94832--94898
28
2.4
26
76
13
71
58
2
17
20
1.52
94902--94968
33
2.0
34
88
2
100
44
10
11
32
1.75
98945--99085
76
1.9
76
84
3
194
16
34
25
24
1.95
101919--101953
18
1.9
18
94
0
61
25
28
22
22
1.99
102642--102674
16
2.1
16
88
11
50
63
0
15
21
1.30
107460--107484
6
4.2
6
100
0
50
0
16
0
84
0.63

Tables:   1

The End!