Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018851.1 Corchorus olitorius cultivar O-4 contig18884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118118

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1586--1640
5
10.2
5
88
11
74
36
0
18
45
1.49
1586--1640
11
5.1
11
89
10
87
36
0
18
45
1.49
1585--1640
22
2.5
22
94
5
96
35
0
17
46
1.49
1991--2111
60
2.0
60
98
0
233
20
16
25
37
1.93
9753--9899
50
2.9
50
96
0
267
17
20
21
40
1.91
11155--11272
27
4.4
27
92
0
191
34
26
21
17
1.95
11451--11500
20
2.5
20
83
3
75
44
0
0
56
0.99
11505--11570
31
2.1
31
88
5
98
40
15
12
31
1.83
12121--12168
24
2.0
24
100
0
96
41
0
25
33
1.55
15696--15732
18
2.0
19
89
5
58
62
24
5
8
1.44
17928--18141
117
1.8
117
90
2
349
37
17
13
31
1.88
19208--19284
23
3.3
23
68
13
68
46
10
3
38
1.56
21604--21636
2
16.5
2
100
0
66
51
0
0
48
1.00
23435--23497
23
2.8
23
78
2
65
53
9
7
28
1.61
23604--23658
21
2.7
20
73
18
58
41
3
20
34
1.69
24063--24104
21
2.0
21
100
0
84
33
33
9
23
1.87
38277--38346
29
2.4
29
85
2
86
37
28
12
21
1.90
45279--45319
17
2.4
17
87
0
55
70
2
0
26
0.99
45858--45892
11
3.2
11
91
0
61
80
17
2
0
0.84
48421--49139
22
33.0
22
71
11
234
36
10
16
36
1.83
48477--49209
66
11.2
63
72
13
276
36
10
17
36
1.83
48845--48969
64
2.0
64
85
6
173
42
8
12
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48951--49202
22
11.5
22
75
12
105
35
9
19
34
1.85
49297--49420
22
5.6
22
80
5
108
40
6
11
41
1.66
49603--49636
16
2.1
16
100
0
68
20
0
32
47
1.51
56166--56220
24
2.3
24
93
0
92
21
27
9
41
1.83
58716--58740
13
1.9
13
100
0
50
0
52
0
48
1.00
65341--65389
23
2.1
23
100
0
98
42
4
16
36
1.67
65519--65556
20
1.9
20
94
0
67
7
10
15
65
1.45
66458--66500
3
15.0
3
85
9
63
69
0
0
30
0.88
66965--67094
6
23.7
6
69
25
65
20
28
29
21
1.98
66965--67094
11
11.8
12
63
26
65
20
28
29
21
1.98
66965--67093
38
3.4
38
98
0
249
20
28
29
21
1.98
67144--67192
18
2.7
18
75
12
55
24
24
26
24
2.00
67223--67258
18
2.0
18
89
10
56
41
0
5
52
1.24
67463--67522
29
2.0
30
84
9
79
40
16
13
30
1.87
70249--70273
12
2.1
12
100
0
50
48
16
16
20
1.82
70443--70487
21
2.1
21
100
0
90
62
15
0
22
1.33
87100--87185
34
2.5
34
98
0
163
36
25
15
23
1.94
92431--92536
53
2.0
53
100
0
212
30
13
30
26
1.94
101619--101687
30
2.3
30
85
12
88
36
0
20
43
1.52
101599--101687
29
3.1
27
79
20
92
33
0
17
48
1.48
103631--103678
4
12.0
4
100
0
96
75
0
0
25
0.81
106785--106817
16
2.0
17
94
5
59
30
0
15
54
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109305--109334
5
6.0
5
100
0
60
40
20
0
40
1.52
115478--115666
95
2.0
95
94
1
335
44
6
3
44
1.48
117616--117643
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!