genome.fa.s18853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018853.1 Corchorus olitorius cultivar O-4 contig18886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88797

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8087--8156	32	2.2	32	97	2	131	21	8	20	50	1.74
8137--8198	4	15.5	4	100	0	124	25	0	24	50	1.50
10756--10827	32	2.2	32	90	0	108	20	15	18	45	1.85
13714--13841	60	2.1	59	82	2	148	40	7	24	27	1.82
16704--16728	8	3.1	8	100	0	50	48	0	24	28	1.52
17405--17498	3	31.3	3	97	0	179	31	0	1	67	0.98
18929--18984	24	2.3	25	75	9	71	17	7	17	57	1.62
21871--21977	54	2.0	54	84	0	142	39	2	29	28	1.71
25315--25536	72	3.1	72	98	0	435	26	19	15	39	1.91
27224--27359	72	1.9	72	87	0	200	25	19	13	41	1.88
57747--58006	102	2.5	104	91	3	398	40	8	10	41	1.68
59126--59181	29	2.0	27	86	6	76	32	3	23	41	1.71
63180--63233	19	2.6	21	77	19	60	38	18	3	38	1.69
64751--64789	20	2.0	20	85	10	53	28	5	2	64	1.28
64943--65174	22	10.5	22	74	8	157	35	9	18	37	1.82
64940--65304	66	5.3	66	74	10	234	35	9	18	36	1.83
65208--65549	22	15.3	22	69	19	99	40	10	15	33	1.82
65424--65573	44	3.4	44	80	10	173	42	9	14	34	1.77
65402--65574	66	2.6	66	78	6	165	43	9	13	32	1.77
65674--65946	22	12.6	22	74	13	158	40	8	14	36	1.77
65676--65946	44	6.2	44	70	17	176	40	8	14	36	1.77
65669--65946	66	4.3	66	75	10	234	40	8	15	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65763--65922	82	1.9	84	82	5	200	41	7	16	34	1.77
65843--66133	22	12.7	23	70	9	132	35	10	16	37	1.83
66004--66091	45	2.0	45	84	4	115	32	12	15	38	1.85
66115--66177	22	2.9	22	76	9	65	49	11	9	30	1.70
81740--81766	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!