Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018866.1 Corchorus olitorius cultivar O-4 contig18899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48703

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315--495
21
8.8
21
73
6
145
30
32
9
27
1.88
4932--4976
21
2.1
22
87
4
65
13
44
8
33
1.75
5092--5116
13
1.9
13
100
0
50
28
8
16
48
1.74
7181--7256
7
10.7
7
76
18
59
44
1
0
53
1.08
7674--7715
10
4.4
9
81
18
50
57
0
0
42
0.99
8135--8204
17
4.2
16
77
20
72
67
4
0
28
1.10
20247--20390
61
2.4
61
86
1
200
29
20
13
36
1.91
24237--24265
3
9.7
3
100
0
58
68
31
0
0
0.89
24949--25059
55
2.0
55
98
0
213
34
24
1
39
1.66
25123--25247
42
3.0
42
97
0
232
30
6
15
48
1.70
27193--27238
3
15.3
3
100
0
92
32
0
0
67
0.91
39697--39730
18
1.9
17
88
5
50
20
14
5
58
1.57
42141--42171
12
2.6
12
89
0
53
0
9
0
90
0.46
42459--42488
11
2.7
11
94
0
51
30
0
0
70
0.88
42471--42535
30
2.2
30
94
2
114
21
9
0
69
1.16
43264--43298
11
3.2
11
83
0
52
77
17
5
0
0.96
43947--44027
39
2.0
40
90
2
128
49
8
4
37
1.55
44108--44517
197
2.0
203
91
6
663
36
11
8
43
1.71
46368--46479
58
1.9
57
89
1
170
32
19
14
33
1.92
48280--48326
25
1.9
24
95
4
85
29
6
8
55
1.55

Tables:   1

The End!