Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018870.1 Corchorus olitorius cultivar O-4 contig18903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12532

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1189--1223
12
2.9
12
100
0
70
42
14
25
17
1.86
4431--4464
2
17.5
2
87
6
52
47
0
0
52
1.00
6888--6938
25
2.0
25
100
0
102
56
3
7
31
1.46
11663--11713
21
2.4
22
80
12
61
19
25
0
54
1.44
11673--11713
21
2.0
21
90
4
66
21
26
0
51
1.48
11671--11718
20
2.5
20
83
10
55
20
31
0
47
1.50
12050--12074
5
5.0
5
100
0
50
60
0
0
40
0.97
12148--12471
180
1.8
178
84
6
449
37
14
13
34
1.86

Tables:   1

The End!