Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018873.1 Corchorus olitorius cultivar O-4 contig18906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15931
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:7192 original size:15 final size:16

Alignment explanation


    Indices: 7172--7201  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       7162 TATAAGTTTA

                            
       7172 TCAAAA-ATCAATTTT
          1 TCAAAAGATCAATTTT

                           
       7187 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

       7202 GAATTCACAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37


Consensus pattern (16 bp):   
TCAAAAGATCAATTTT

Done.