Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018879.1 Corchorus olitorius cultivar O-4 contig18912, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4488
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:642 original size:51 final size:50

Alignment explanation


    Indices: 541--646  Score: 126
    Period size: 51  Copynumber: 2.1  Consensus size: 50

        531 GTTCTTCATA

                            *                        * **     
        541 TTTTCCTTGTTTAGATTTTGTCTCCGGACAAACAAACACTCTTTTAGTGT
          1 TTTTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT

                                            *                    
        591 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTTC-CTTGTTT-AGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGT

                 
        642 TTTTC
          1 TTTTC

        647 ATTCAGAAAT


Statistics
Matches: 48,  Mismatches: 5, Indels: 5
        0.83            0.09        0.09

Matches are distributed among these distances:
  50    7  0.15
  51   40  0.83
  52    1  0.02

ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43


Consensus pattern (50 bp):   
TTTTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT
Done.