Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018884.1 Corchorus olitorius cultivar O-4 contig18917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11608
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:1056 original size:2 final size:2

Alignment explanation


    Indices: 1051--1087  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       1041 CACACACAAG

                                                                   
       1051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1088 CATGTACGGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:4109 original size:21 final size:21

Alignment explanation


    Indices: 4083--4122  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4073 TATAACAACT

                                 
       4083 TTACAAATTAAATTTGAATTA
          1 TTACAAATTAAATTTGAATTA

                               
       4104 TTACAAATTAAATTTGAAT
          1 TTACAAATTAAATTTGAAT

       4123 GGAGATACGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42


Consensus pattern (21 bp):   
TTACAAATTAAATTTGAATTA
Done.