Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018885.1 Corchorus olitorius cultivar O-4 contig18918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3575
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:2450 original size:16 final size:15

Alignment explanation


    Indices: 2429--2475  Score: 53
    Period size: 16  Copynumber: 3.1  Consensus size: 15

       2419 AGGAATAGGC

                           
       2429 AATCAATCAAAGCAA
          1 AATCAATCAAAGCAA

                      *     
       2444 TAATCAATCAGAGCAA
          1 -AATCAATCAAAGCAA

                            
       2460 AA-CAATGCAAAG-AA
          1 AATCAAT-CAAAGCAA

              
       2474 AA
          1 AA

       2476 AGTAAATGGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  14    8  0.29
  15    6  0.21
  16   14  0.50

ACGTcount: A:0.60, C:0.17, G:0.11, T:0.13


Consensus pattern (15 bp):   
AATCAATCAAAGCAA
Done.