Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001889.1 Corchorus olitorius cultivar O-4 contig01889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 779

Length: 1299
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.35


Found at i:456 original size:32 final size:32

Alignment explanation


    Indices: 415--475  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        405 AAATATGTTT

                              *             
        415 GAAAAATAAGGATATAATGGTCGATTCAATTA
          1 GAAAAATAAGGATATAATAGTCGATTCAATTA

                       *                 
        447 GAAAAATAAGGGTATAATAGTCGATTCAA
          1 GAAAAATAAGGATATAATAGTCGATTCAA

        476 AAGTTTTACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAGGATATAATAGTCGATTCAATTA
Done.