Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018891.1 Corchorus olitorius cultivar O-4 contig18924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59095

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2223--2292
33
2.1
33
84
10
90
47
10
11
31
1.73
7280--7312
15
2.1
16
94
5
59
78
12
3
6
1.04
7442--7504
23
2.8
24
80
9
78
34
9
7
47
1.65
7943--7982
15
2.6
16
92
4
64
65
10
10
15
1.48
26307--26361
25
2.2
26
83
6
69
18
5
5
70
1.26
26561--26594
8
4.1
8
88
3
50
0
2
14
82
0.79
27109--27158
21
2.4
21
96
0
91
28
16
28
28
1.97
27274--27315
21
2.0
21
95
0
75
28
16
26
28
1.97
27869--27918
26
2.0
23
88
11
73
28
24
4
44
1.72
33305--33354
21
2.4
21
93
6
84
28
20
26
26
1.99
34269--34314
22
2.1
22
88
8
67
30
19
26
23
1.98
34994--35062
21
3.2
21
74
8
66
18
30
37
13
1.89
39080--39132
18
2.7
21
82
11
67
37
3
11
47
1.58
39656--39753
34
2.8
34
87
6
135
30
18
17
33
1.94
39728--39786
27
2.2
27
87
6
84
27
18
15
38
1.91

Tables:   1

The End!