Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018893.1 Corchorus olitorius cultivar O-4 contig18926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48284

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--44
15
2.7
15
88
4
53
0
28
0
71
0.86
10--58
21
2.4
21
84
15
68
0
28
0
71
0.86
161--221
22
2.8
22
89
0
95
21
36
37
4
1.75
2271--2331
21
2.9
21
87
0
77
32
22
29
14
1.94
5934--5958
13
1.9
13
100
0
50
88
0
0
12
0.53
10296--10399
22
4.8
21
76
4
91
38
9
16
35
1.81
10300--10399
44
2.3
44
82
3
112
39
10
14
37
1.79
10467--11134
22
30.3
22
69
10
247
37
9
16
36
1.81
11699--12236
22
23.7
22
72
12
304
35
10
17
36
1.84
11746--11901
67
2.3
67
76
13
160
37
11
15
35
1.84
11706--12471
44
16.9
44
70
13
238
37
9
17
36
1.82
11943--12471
66
7.8
65
71
16
274
37
9
17
35
1.82
12187--12287
53
1.9
53
87
0
148
35
9
18
35
1.84
12165--12310
75
1.9
75
86
2
204
36
9
19
34
1.84
12240--12477
22
10.9
22
72
5
151
40
7
16
35
1.77
12289--12383
43
2.2
42
81
10
104
35
10
15
37
1.82
14322--14427
44
2.4
46
80
12
132
39
9
17
33
1.82
14322--14472
22
6.9
21
77
13
112
39
11
19
30
1.86
14478--14525
22
2.2
22
81
7
53
31
6
22
39
1.79
14495--14536
22
1.9
22
85
9
59
23
14
26
35
1.93
15908--15933
12
2.2
12
100
0
52
92
0
7
0
0.39
15906--15936
15
2.1
15
93
0
53
90
0
9
0
0.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17446--17485
21
1.9
21
100
0
80
40
5
0
55
1.22
19896--19974
38
2.1
38
88
4
117
41
25
13
18
1.88
30289--30316
2
14.0
2
100
0
56
50
0
0
50
1.00
39861--39900
15
2.6
16
88
4
55
15
10
12
62
1.54
45345--45391
18
2.6
19
73
10
53
46
0
51
2
1.13
46906--46944
2
19.5
2
94
0
69
53
0
46
0
1.00
47181--47247
21
3.3
19
78
12
62
11
23
29
34
1.91

Tables:   1

The End!