Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018897.1 Corchorus olitorius cultivar O-4 contig18930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21582

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
732--848
57
2.1
57
98
0
225
18
26
11
42
1.85
1171--1211
7
5.9
7
100
0
82
26
0
0
73
0.84
1918--2178
54
5.0
53
88
6
354
44
9
8
38
1.67
2067--2154
27
3.3
27
65
23
76
44
12
4
38
1.63
4109--4235
45
2.8
45
91
0
218
37
22
7
33
1.81
11303--11364
31
2.0
31
100
0
124
38
6
19
35
1.77
15182--15232
24
2.3
22
90
10
77
58
17
9
13
1.61
15204--15531
63
5.2
63
83
8
323
56
14
16
11
1.67
15452--15480
14
2.1
14
93
6
51
58
13
20
6
1.58
15511--15554
14
3.1
14
80
0
52
59
15
15
9
1.61
15519--15562
14
3.1
14
80
0
52
61
18
11
9
1.55
18031--18076
21
2.1
22
92
4
76
54
17
13
15
1.71
18031--18065
10
3.4
10
84
7
52
54
20
11
14
1.70
18051--18131
29
2.9
27
77
18
78
50
16
14
18
1.78
18202--18257
28
1.9
29
85
7
78
57
12
14
16
1.66
18339--18420
28
3.0
27
69
25
73
50
13
3
32
1.59
19466--19518
23
2.3
23
80
0
70
56
1
0
41
1.10
21328--21467
75
1.9
75
85
8
198
37
15
25
22
1.92

Tables:   1

The End!