Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018898.1 Corchorus olitorius cultivar O-4 contig18931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86874

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51--118
29
2.4
29
82
7
86
54
2
1
41
1.24
51--118
15
4.7
15
77
13
72
54
2
1
41
1.24
44--118
7
10.6
7
76
13
73
53
2
1
42
1.23
49--131
29
2.7
30
71
12
71
57
2
1
38
1.19
8512--8557
24
2.0
23
91
4
74
56
2
32
8
1.42
9352--9397
6
8.0
6
77
18
53
0
0
19
80
0.71
13361--13392
10
3.2
10
95
0
55
62
31
0
6
1.20
16349--16514
88
1.9
88
97
0
314
22
8
25
43
1.81
22150--22218
29
2.4
29
78
4
70
31
5
21
40
1.77
31561--31590
13
2.3
13
94
0
51
33
3
13
50
1.58
32204--32286
38
2.2
38
97
2
157
30
10
7
51
1.63
32732--32792
30
2.0
30
90
0
95
47
4
22
24
1.71
43301--43375
31
2.4
30
91
6
123
26
16
20
37
1.93
78995--79061
22
3.0
22
100
0
134
49
13
4
32
1.62
79413--79600
103
1.8
102
95
3
342
34
6
14
44
1.72
83012--83043
2
16.0
2
100
0
64
50
0
0
50
1.00
86448--86482
15
2.2
16
90
5
54
17
5
14
62
1.49

Tables:   1

The End!