Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000189.1 Corchorus olitorius cultivar O-4 contig00189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38


Found at i:201 original size:24 final size:23

Alignment explanation


    Indices: 147--202  Score: 76
    Period size: 23  Copynumber: 2.4  Consensus size: 23

        137 TTTTTGTAAC

                              * ** 
        147 ATTATTTTAAGTTTACTTTTTTT
          1 ATTATTTTAAGTTTACTTGTACT

                                    
        170 ATTATTTTAAGTTTACTTAGTACT
          1 ATTATTTTAAGTTTACTT-GTACT

                     
        194 ATTATTTTA
          1 ATTATTTTA

        203 TGAGGAAAAT


Statistics
Matches: 29,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  23   18  0.62
  24   11  0.38

ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62


Consensus pattern (23 bp):   
ATTATTTTAAGTTTACTTGTACT
Done.