Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001890.1 Corchorus olitorius cultivar O-4 contig01890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37


Found at i:1095 original size:35 final size:36

Alignment explanation


    Indices: 1029--1096  Score: 93
    Period size: 35  Copynumber: 1.9  Consensus size: 36

       1019 CCGACCCAAT

                               *  *  **         
       1029 TTTCTTTTGACTTAAGTTTTTTTTTTTTTTTGGAAA
          1 TTTCTTTTGACTTAAGTTTATTCTTAGTTTTGGAAA

                                             
       1065 TTTCTTTTGACTT-AGTTTATTCTTAGTTTTGG
          1 TTTCTTTTGACTTAAGTTTATTCTTAGTTTTGG

       1097 GAGAAAGTAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  35   15  0.54
  36   13  0.46

ACGTcount: A:0.15, C:0.07, G:0.13, T:0.65


Consensus pattern (36 bp):   
TTTCTTTTGACTTAAGTTTATTCTTAGTTTTGGAAA
Done.