Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018901.1 Corchorus olitorius cultivar O-4 contig18934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70675

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1947--1971
2
12.5
2
100
0
50
48
0
0
52
1.00
3835--4384
131
4.1
130
84
6
710
39
13
14
33
1.84
3835--4382
268
2.1
263
86
5
755
39
13
14
33
1.84
4423--5109
131
5.3
128
83
7
758
37
14
15
32
1.88
4422--5117
257
2.7
259
82
6
728
37
14
15
32
1.87
7151--7184
15
2.3
15
89
0
50
50
17
0
32
1.47
12027--12333
77
4.0
77
85
1
389
20
18
29
30
1.97
19123--19157
2
18.0
2
94
5
63
48
0
0
51
1.00
26122--26156
18
1.9
18
94
0
61
51
11
8
28
1.67
26195--26236
15
3.1
14
87
12
61
50
0
0
50
1.00
26361--26435
35
2.1
35
97
0
141
41
18
17
22
1.90
32391--32530
3
46.7
3
86
0
145
6
35
1
57
1.33
53999--54092
29
3.1
29
83
4
89
20
22
14
42
1.88
54022--54092
29
2.4
30
86
6
92
21
19
14
45
1.85
54022--54099
30
2.6
28
84
9
93
20
21
14
43
1.87
54225--54288
29
2.2
30
91
2
103
43
12
25
18
1.85
54233--54295
29
2.1
30
85
2
83
46
11
23
19
1.82
66397--66552
79
2.0
79
93
0
267
28
28
15
27
1.96
67306--67419
39
2.9
39
88
2
167
22
25
21
29
1.99
68645--68739
3
31.3
3
97
2
181
66
0
0
33
0.92
68639--68758
18
6.3
20
92
6
150
64
0
0
35
0.94
70364--70412
23
2.1
23
88
0
71
44
14
8
32
1.74

Tables:   1

The End!