Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018904.1 Corchorus olitorius cultivar O-4 contig18937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109109

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4420--4450
2
15.5
2
100
0
62
51
0
0
48
1.00
6329--6406
38
2.1
38
100
0
156
25
7
10
56
1.59
9998--10040
21
2.1
21
86
4
61
39
2
16
41
1.61
10127--10165
20
2.0
20
84
0
51
53
10
5
30
1.56
10210--10275
21
3.2
22
79
14
61
56
4
10
28
1.53
10267--10318
22
2.4
22
77
3
61
48
7
13
30
1.71
10424--11248
199
4.2
199
88
1
1161
34
12
17
34
1.88
10424--11248
397
2.1
398
89
0
1258
34
12
17
34
1.88
14619--14679
2
27.5
2
81
18
68
45
0
9
44
1.37
14619--14679
7
9.2
6
86
13
68
45
0
9
44
1.37
14619--14679
9
6.8
9
87
12
90
45
0
9
44
1.37
14919--15113
98
2.0
98
95
0
354
33
10
16
38
1.83
15103--15138
7
5.4
7
96
3
58
44
0
8
47
1.33
18026--18155
45
2.9
45
91
2
208
38
21
6
33
1.78
23511--23542
12
2.7
12
100
0
64
25
34
0
40
1.56
25362--25422
2
31.0
2
96
3
115
50
49
0
0
1.00
27105--27131
13
2.1
13
100
0
54
29
7
33
29
1.85
33256--33289
2
17.0
2
100
0
68
50
0
0
50
1.00
36017--36067
21
2.4
22
80
3
59
54
11
7
25
1.63
37459--37507
24
2.0
24
100
0
98
46
28
8
16
1.75
39418--39449
2
16.0
2
100
0
64
50
0
0
50
1.00
49101--49154
16
3.3
16
73
14
56
48
0
18
33
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49102--49156
17
3.3
17
74
5
67
49
0
18
32
1.48
49089--49156
33
2.1
33
97
0
127
45
0
20
33
1.52
54868--54907
20
2.0
20
100
0
80
20
20
25
35
1.96
56405--56429
2
12.5
2
100
0
50
52
0
0
48
1.00
57393--57472
30
2.7
30
100
0
160
58
12
15
13
1.63
57615--57691
38
2.0
38
92
0
127
35
9
24
31
1.87
59092--59128
17
2.2
17
100
0
74
5
35
21
37
1.77
70092--70130
6
6.8
6
97
2
64
0
0
10
89
0.48
79244--79321
30
2.6
30
100
0
156
48
25
7
17
1.74
87592--87653
25
2.5
25
97
0
115
20
20
29
29
1.98
89463--89518
16
3.6
16
75
17
55
60
7
12
19
1.55
89481--89518
15
2.5
15
84
16
51
60
5
13
21
1.52
94482--94525
16
2.8
16
78
0
52
59
4
2
34
1.30
96820--96844
10
2.5
10
100
0
50
24
8
16
52
1.70
96960--97073
11
10.8
11
69
7
67
43
3
1
50
1.29
97996--98043
23
2.1
23
92
0
78
45
2
12
39
1.54
106800--106840
21
1.9
22
85
5
57
9
17
29
43
1.80
108435--108700
132
2.0
134
94
1
473
31
13
6
47
1.68

Tables:   1

The End!