Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018906.1 Corchorus olitorius cultivar O-4 contig18939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125896

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1606--1643
4
9.5
4
94
0
67
55
0
44
0
0.99
6138--6163
9
2.9
9
100
0
52
0
30
0
69
0.89
8455--8510
29
1.9
29
96
0
103
44
30
3
21
1.69
12022--12106
39
2.2
39
97
0
161
24
24
25
24
2.00
17763--17822
29
2.1
29
84
3
77
46
5
6
41
1.52
31372--31398
14
1.9
14
100
0
54
0
3
14
81
0.82
31783--31807
6
4.2
6
100
0
50
48
20
32
0
1.50
32209--32243
18
1.9
18
88
0
52
22
8
0
68
1.16
33529--33622
45
2.2
42
81
11
120
37
20
5
37
1.75
39004--39032
6
4.8
6
100
0
58
34
34
0
31
1.58
56304--56346
3
14.3
3
100
0
86
0
32
0
67
0.91
64071--64108
2
20.0
2
89
10
62
47
0
0
52
1.00
79534--79563
15
2.0
15
100
0
60
13
33
20
33
1.91
85078--85332
124
2.0
126
82
11
315
37
9
2
50
1.48
85078--85332
123
2.0
123
87
7
357
37
9
2
50
1.48
85319--85357
14
2.9
13
80
3
51
41
2
2
53
1.28
85373--85541
85
2.0
85
95
1
304
40
8
1
48
1.45
93819--93843
6
4.2
6
100
0
50
48
52
0
0
1.00
95784--95825
7
6.1
7
86
5
59
57
4
0
38
1.20
95811--95915
51
2.1
51
98
0
201
38
8
13
40
1.75
97935--97986
25
2.1
25
100
0
104
28
7
17
46
1.75
104271--104295
6
4.2
6
100
0
50
32
16
52
0
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105373--105431
27
2.2
27
87
0
82
33
11
25
28
1.91
109285--109312
6
4.7
6
100
0
56
71
14
14
0
1.15
109773--109804
4
8.0
4
92
0
55
71
0
0
28
0.86
112206--112374
92
1.8
91
94
1
302
23
12
14
49
1.78
112986--113149
81
2.0
81
100
0
328
34
6
25
34
1.81
122184--122236
28
1.9
27
85
11
72
45
32
1
20
1.62
122411--122450
19
2.1
19
100
0
80
45
0
15
40
1.46
122803--122877
33
2.3
33
83
2
89
14
41
36
8
1.76

Tables:   1

The End!