Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018913.1 Corchorus olitorius cultivar O-4 contig18946, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97992

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
304--339
6
5.8
6
93
3
54
50
0
11
38
1.38
405--461
23
2.4
25
82
11
82
50
17
10
21
1.75
2883--2911
10
2.9
10
100
0
58
89
0
0
10
0.48
8421--9019
299
2.0
299
98
0
1162
32
21
19
27
1.97
17906--17965
24
2.3
26
86
8
79
61
11
13
13
1.57
19669--19762
45
2.2
43
86
7
129
38
22
5
34
1.77
25942--25994
27
2.0
27
84
0
70
41
33
3
20
1.70
28775--28805
5
6.2
5
92
0
53
0
41
0
58
0.98
32174--32240
2
34.5
2
78
11
68
47
1
1
49
1.19
32940--33100
70
2.3
70
98
0
313
22
8
13
54
1.66
33613--33667
25
2.1
27
90
6
87
27
12
7
52
1.65
38476--38509
12
2.8
12
90
0
50
38
2
0
58
1.13
46032--46619
22
26.6
22
70
11
236
36
10
16
36
1.83
48193--48230
19
2.0
19
89
0
58
47
5
0
47
1.24
52679--52886
31
6.3
34
76
13
114
22
27
26
23
1.99
52702--52953
34
7.6
32
75
9
175
21
25
28
24
1.99
52703--52953
66
3.8
66
82
7
285
21
25
28
24
1.99
52700--52953
35
7.6
33
75
11
205
21
25
28
24
1.99
53457--53495
19
2.1
19
85
4
53
15
0
5
79
0.90
53530--53621
27
3.5
28
73
16
97
8
34
34
21
1.84
53505--53621
27
4.4
26
72
14
87
8
35
33
23
1.85
55331--55399
25
2.8
24
86
4
102
17
13
24
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56545--57388
420
2.0
425
90
3
1339
36
10
10
42
1.74
59326--59378
23
2.3
23
84
9
65
0
26
1
71
0.96
60389--60421
14
2.4
14
100
0
66
21
0
21
57
1.41
60969--61020
22
2.4
22
81
9
63
38
15
3
42
1.65
61039--61096
23
2.5
23
88
5
82
41
12
6
39
1.69
61020--61291
22
12.6
21
68
17
112
36
14
8
40
1.78
61372--61597
22
10.3
21
70
13
93
32
14
10
42
1.79
61372--61536
22
7.6
22
73
9
108
34
13
10
41
1.78
61348--61538
44
4.4
43
76
5
136
33
13
10
42
1.79
61389--61517
66
2.0
66
82
3
161
34
13
10
41
1.77
61348--61511
88
1.9
88
82
5
206
32
12
12
42
1.80
61636--61752
22
5.3
22
72
19
91
44
16
7
31
1.76
61622--61770
44
3.4
41
71
14
111
40
18
6
34
1.77
61801--61976
22
7.9
22
72
13
110
36
17
10
35
1.84
61792--62021
68
3.5
66
80
7
232
37
18
8
35
1.82
61899--61947
23
2.1
23
88
7
73
30
16
8
44
1.76
61825--61954
46
2.9
45
74
14
115
35
17
10
36
1.85
61788--61986
67
3.0
65
82
7
229
35
17
10
36
1.84
66758--66791
15
2.2
15
89
5
50
0
26
0
73
0.83
66761--66802
22
1.9
22
95
0
75
0
28
2
69
1.01
66870--66932
20
3.5
20
67
24
66
7
33
41
17
1.79
66855--66996
34
4.1
34
83
3
160
10
35
39
14
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67201--67256
12
4.7
12
93
0
94
1
14
30
53
1.51
67762--67787
5
5.2
5
100
0
52
0
23
38
38
1.55
69516--69558
13
3.3
13
84
9
52
18
6
16
58
1.60
71975--72004
10
3.0
10
100
0
60
10
40
10
40
1.72
80054--80096
21
2.0
21
86
8
61
23
2
11
62
1.40
80390--80433
21
2.1
21
100
0
88
31
4
20
43
1.72
80924--80980
22
2.5
22
94
5
96
47
3
0
49
1.18
80938--80979
13
3.5
13
75
24
56
45
4
0
50
1.23
93503--93544
15
2.7
15
92
3
66
11
9
14
64
1.50
93865--93959
30
3.1
30
72
11
84
31
4
16
47
1.66
93877--93959
32
2.7
30
72
9
78
32
3
18
45
1.66
96943--96986
22
2.0
22
86
0
61
29
11
0
59
1.32

Tables:   1

The End!