Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018914.1 Corchorus olitorius cultivar O-4 contig18947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123749

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2489--2524
19
1.9
18
88
5
54
27
22
8
41
1.82
2969--3028
30
2.0
30
87
6
86
33
20
6
40
1.78
2981--3016
19
1.9
18
88
5
54
30
22
8
38
1.83
2981--3027
11
4.7
10
80
17
53
31
21
8
38
1.83
3319--3353
17
2.1
17
94
0
61
54
17
8
20
1.68
4159--4230
27
2.7
27
93
0
117
23
18
41
16
1.89
9829--10346
163
3.2
163
91
1
797
30
19
19
30
1.96
11535--11566
11
2.8
12
86
13
50
37
6
18
37
1.76
11804--11835
11
2.8
12
86
13
50
37
6
18
37
1.76
11341--11875
269
2.0
270
97
0
1018
31
8
18
41
1.81
13222--13263
16
2.7
15
88
7
57
11
9
9
69
1.38
17472--17527
29
1.9
29
100
0
112
33
8
7
50
1.61
17475--17527
14
3.7
14
90
5
88
33
9
5
50
1.58
18758--18787
11
2.7
11
100
0
60
43
0
20
36
1.52
20185--20226
16
2.7
15
88
7
57
11
9
9
69
1.38
25248--25474
41
5.6
40
74
11
196
49
16
11
22
1.77
25260--25475
81
2.7
81
92
4
348
50
16
11
22
1.77
28499--28524
11
2.4
11
100
0
52
7
15
7
69
1.35
29295--29325
15
2.1
15
93
0
53
12
9
12
64
1.50
30010--30101
39
2.4
39
83
5
116
48
15
13
22
1.79
30193--31742
30
51.0
30
86
5
2030
49
16
12
20
1.78
31085--31215
38
3.4
38
88
0
172
51
16
9
22
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31709--31880
38
4.5
38
89
0
254
49
14
11
24
1.76
32029--32356
163
2.0
163
84
1
424
33
17
21
28
1.96
33831--33862
12
2.8
12
95
4
57
6
6
6
81
0.99
33830--33873
13
3.6
12
82
11
54
6
4
4
84
0.88
33856--33918
10
6.3
10
78
12
67
14
0
6
79
0.92
33830--33872
12
3.4
13
81
12
54
6
4
4
83
0.89
33857--33914
30
1.9
31
89
3
91
13
0
6
79
0.93
52814--52881
27
2.5
27
92
0
109
14
19
27
38
1.91
52814--52889
27
2.8
27
89
0
107
17
17
26
39
1.91
56568--56603
17
2.1
17
94
0
63
47
13
16
22
1.82
57704--58055
50
7.1
50
89
3
532
36
11
28
23
1.90
58285--58352
27
2.5
27
97
0
127
14
20
29
35
1.93
61362--61399
20
1.9
20
88
0
58
39
5
10
44
1.61
62925--63013
31
2.9
31
91
1
153
52
6
17
22
1.68
65247--65282
17
2.1
17
94
0
63
22
16
13
47
1.82
69238--69310
21
3.6
21
67
14
62
20
6
17
54
1.65
69616--69657
19
2.2
19
86
4
57
64
2
4
28
1.26
73483--73518
18
1.9
19
88
5
56
33
8
11
47
1.69
74935--74972
17
2.2
17
100
0
76
65
5
13
15
1.43
76092--76142
20
2.5
20
96
0
93
19
25
41
13
1.88
76563--76620
22
2.7
23
92
7
95
31
10
18
39
1.85
79421--79468
24
2.0
24
100
0
96
29
16
20
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82875--82910
17
2.1
17
89
0
54
30
11
19
38
1.86
87455--87502
18
2.7
18
93
0
78
20
22
27
29
1.99
89284--89319
17
2.1
17
89
0
54
30
11
19
38
1.86
89560--89621
31
2.0
31
93
0
106
33
17
6
41
1.75
92723--92784
31
2.0
31
93
0
106
33
17
6
41
1.75
95846--95872
13
2.1
13
100
0
54
33
22
22
22
1.97
101313--101394
31
2.6
31
88
0
110
15
21
28
34
1.95
101369--101427
31
1.9
31
82
6
75
13
20
35
30
1.91
104434--104577
22
6.7
21
70
16
89
37
9
15
37
1.80
104437--104540
44
2.4
44
82
4
122
37
9
14
38
1.79
104480--104604
22
5.7
22
76
3
103
36
9
13
40
1.78
104809--104833
6
4.2
6
100
0
50
20
0
16
64
1.30
105685--105727
21
2.0
21
86
0
59
53
11
0
34
1.37
108919--108969
19
2.7
19
81
6
59
50
11
5
31
1.62
112327--112377
19
2.7
18
85
8
66
54
5
3
35
1.43
112674--112737
31
2.0
32
93
6
112
43
9
9
37
1.69
113044--113353
155
2.0
155
100
0
620
32
16
12
38
1.87
116714--117243
30
17.7
30
87
4
637
30
19
18
31
1.96
117176--117240
27
2.4
27
97
0
121
36
16
16
29
1.92
122077--122110
16
2.2
16
89
5
52
35
26
8
29
1.87
122248--122286
19
2.1
19
100
0
78
43
10
10
35
1.73

Tables:   1

The End!