Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018915.1 Corchorus olitorius cultivar O-4 contig18948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2464
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33


Found at i:64 original size:18 final size:18

Alignment explanation


    Indices: 41--75  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         31 ATGGCTGTGA

                              
         41 ACATCACAAAATGTCAGT
          1 ACATCACAAAATGTCAGT

                  *          
         59 ACATCAGAAAATGTCAG
          1 ACATCACAAAATGTCAG

         76 AACAACAAGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.46, C:0.20, G:0.14, T:0.20


Consensus pattern (18 bp):   
ACATCACAAAATGTCAGT
Done.