Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018916.1 Corchorus olitorius cultivar O-4 contig18949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36


Found at i:1607 original size:22 final size:22

Alignment explanation


    Indices: 1582--1623  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1572 GAAATACAGG

                       *          
       1582 ACAAGACCTGGGCAGGAGTTAC
          1 ACAAGACCTGGCCAGGAGTTAC

                 *    *         
       1604 ACAAGTCCTGTCCAGGAGTT
          1 ACAAGACCTGGCCAGGAGTT

       1624 GTTGCGGGAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.29, C:0.24, G:0.29, T:0.19


Consensus pattern (22 bp):   
ACAAGACCTGGCCAGGAGTTAC
Done.