genome.fa.s18917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018917.1 Corchorus olitorius cultivar O-4 contig18950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95291

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3065--3115	24	2.1	24	92	0	84	21	35	3	39	1.72
3074--3123	24	2.1	24	88	0	73	20	40	6	34	1.77
5227--5375	61	2.5	60	86	1	190	53	21	3	22	1.61
5230--5407	61	2.9	61	81	3	189	48	20	3	27	1.65
11153--11178	7	3.7	7	100	0	52	26	26	0	46	1.53
18685--18735	25	2.0	25	85	7	68	47	21	13	17	1.82
21185--21306	58	2.1	58	82	0	145	29	13	23	33	1.93
38918--38991	36	2.1	36	100	0	148	33	24	14	27	1.94
43122--43150	6	4.8	6	100	0	58	13	0	0	86	0.58
43617--43697	22	3.8	21	81	4	90	40	9	9	39	1.72
43969--44004	2	18.0	2	100	0	72	50	0	0	50	1.00
44727--44793	35	1.9	35	87	0	98	37	31	4	26	1.77
45598--45629	16	2.0	16	100	0	64	25	18	18	37	1.94
46702--46747	21	2.2	21	100	0	92	34	0	26	39	1.57
47287--47316	2	15.0	2	100	0	60	50	0	50	0	1.00
49053--49106	26	2.1	26	100	0	108	25	14	14	44	1.84
49827--49896	29	2.5	29	88	4	99	40	4	21	34	1.73
51559--51841	41	6.7	41	78	10	270	22	8	26	42	1.82
51545--51841	84	3.5	84	88	3	436	22	9	25	41	1.84
56158--56268	56	2.0	56	94	0	195	15	10	23	50	1.75
56428--56470	22	2.0	22	86	9	61	20	30	25	23	1.99
61696--61758	30	2.1	31	84	3	83	47	20	9	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61608--61945	135	2.5	136	84	3	439	38	19	12	29	1.89
61608--61968	136	2.7	135	82	5	449	37	19	12	30	1.89
63312--63384	23	3.3	23	88	7	114	31	2	8	57	1.42
63311--63376	21	3.0	21	87	8	96	28	3	9	59	1.43
63589--63633	12	3.6	12	81	6	54	60	2	6	31	1.35
63584--63649	24	2.7	24	82	15	82	59	3	7	30	1.41
85525--85678	76	2.0	76	100	0	308	31	14	15	38	1.88
89252--89282	1	31.0	1	100	0	62	0	0	0	100	0.00

Tables:   1

The End!