Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018919.1 Corchorus olitorius cultivar O-4 contig18952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77214

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
696--731
19
1.9
18
88
5
54
41
8
22
27
1.82
684--743
30
2.0
30
83
6
77
41
8
18
31
1.80
9915--9960
17
2.8
16
83
9
65
56
0
0
43
0.99
9921--9959
21
1.9
20
89
5
60
53
0
0
46
1.00
17651--17692
20
2.1
20
86
0
57
21
21
40
16
1.91
22275--22311
19
1.9
19
88
0
56
24
21
8
45
1.78
23154--23553
201
2.0
201
100
0
800
31
13
17
37
1.89
32366--32391
13
2.0
13
100
0
52
46
15
7
30
1.74
34266--34301
19
1.9
18
88
5
54
33
22
2
41
1.68
34558--34691
49
2.8
47
86
6
180
48
6
17
27
1.72
42079--42134
24
2.3
24
100
0
112
26
3
21
48
1.66
50845--50969
49
2.6
48
84
5
162
49
6
16
28
1.69
53097--53131
18
2.0
18
88
5
54
37
11
5
45
1.64
53401--53449
22
2.3
21
86
6
64
61
8
8
22
1.51
58247--58282
19
1.9
18
88
5
54
33
22
2
41
1.68
58737--58794
29
2.0
29
93
0
98
36
15
25
22
1.94
59263--59325
34
1.9
33
93
6
110
22
20
33
23
1.97
63115--63147
15
2.2
15
100
0
66
27
12
12
48
1.76
66277--66306
5
6.0
5
100
0
60
40
20
0
40
1.52
75911--75944
6
5.7
6
92
0
59
0
67
14
17
1.23
76446--76478
6
5.5
6
96
0
57
0
12
0
87
0.53
76447--76485
11
3.5
11
83
13
53
0
12
0
87
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76446--76485
17
2.4
16
84
12
53
0
12
0
87
0.54

Tables:   1

The End!