Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018920.1 Corchorus olitorius cultivar O-4 contig18953, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76823

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8560--8588
6
4.8
6
100
0
58
68
0
13
17
1.20
14689--14731
15
2.9
15
78
0
50
13
37
0
48
1.43
16584--16654
28
2.4
30
88
6
101
35
26
7
30
1.83
17713--17786
29
2.6
29
100
0
148
33
25
21
18
1.96
18031--18103
31
2.4
31
83
4
94
36
15
21
26
1.93
19117--19242
60
2.1
59
83
4
164
34
11
17
36
1.87
19416--19884
232
2.0
234
92
2
789
42
13
11
32
1.80
22658--22741
33
2.6
33
84
5
109
13
32
38
16
1.87
23245--23293
25
2.0
25
84
11
66
8
38
16
36
1.78
24066--24130
34
1.9
34
100
0
130
43
30
7
18
1.78
24077--24134
18
3.3
18
66
9
57
41
25
8
24
1.83
25091--25219
21
6.1
21
90
0
177
24
13
23
38
1.91
25972--26018
13
3.6
13
73
21
53
51
2
44
2
1.25
52031--52078
19
2.5
20
90
6
73
52
0
0
47
1.00
52033--52078
15
3.1
15
79
17
51
52
0
0
47
1.00
53291--53351
24
2.5
24
86
0
77
40
1
3
54
1.27
63170--63211
21
2.0
21
95
0
75
50
19
16
14
1.79
69402--69492
2
45.5
2
100
0
182
0
49
0
50
1.00
72255--72294
20
2.0
19
85
9
53
27
22
7
42
1.80
73569--73641
29
2.5
29
90
0
110
35
9
9
45
1.70

Tables:   1

The End!