Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018924.1 Corchorus olitorius cultivar O-4 contig18957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72237

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161--582
203
2.1
202
95
4
757
35
10
12
41
1.78
598--643
24
1.9
24
82
8
58
28
26
23
21
1.99
2772--2876
49
2.1
49
96
0
192
51
14
15
19
1.76
14446--14524
41
2.0
39
87
5
113
48
13
17
20
1.81
17936--17984
19
2.6
20
71
9
50
30
0
10
59
1.31
22315--22347
2
16.5
2
100
0
66
51
0
0
48
1.00
23234--23272
14
2.9
13
80
3
51
53
2
2
41
1.28
23258--23516
127
2.0
127
84
8
337
51
1
9
37
1.46
25803--25893
22
4.0
22
78
10
103
30
9
19
39
1.85
25911--26058
22
6.8
21
76
13
104
36
8
17
37
1.80
25911--26058
44
3.4
43
78
7
147
36
8
17
37
1.80
25911--26058
66
2.2
66
79
9
167
36
8
17
37
1.80
26104--26375
22
12.5
21
70
15
110
42
9
15
31
1.79
26121--26350
22
10.5
22
72
12
111
42
9
16
32
1.79
26157--26264
44
2.4
45
84
6
130
41
9
14
34
1.78
26456--26903
22
20.6
22
69
13
193
37
10
16
35
1.83
26457--26576
64
1.9
64
84
6
163
39
10
15
35
1.80
26475--26575
42
2.3
43
83
11
136
39
9
11
38
1.75
26709--26766
23
2.5
24
78
10
59
37
10
10
41
1.73
28741--28860
60
2.0
60
98
0
231
39
18
10
31
1.85
32189--32229
21
1.9
22
90
5
66
46
29
14
9
1.77
33043--33293
122
2.0
127
89
6
386
48
1
11
38
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33381--33416
10
3.7
10
88
3
56
52
0
16
30
1.44
37235--37358
61
2.0
61
98
0
239
26
21
18
33
1.97
39315--39349
2
17.5
2
100
0
70
48
0
0
51
1.00
39620--39713
46
2.0
46
100
0
188
37
30
17
14
1.90
40512--40542
6
5.2
6
96
0
53
0
16
64
19
1.29
47571--47607
2
19.0
2
88
5
58
51
2
0
45
1.15
51834--51865
2
16.0
2
93
0
55
46
0
3
50
1.17
59661--59693
15
2.1
16
88
5
50
87
0
9
3
0.63
70122--70178
25
2.4
25
88
5
82
61
3
3
31
1.30
70930--70963
15
2.3
15
90
5
52
64
0
11
23
1.26

Tables:   1

The End!