Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018925.1 Corchorus olitorius cultivar O-4 contig18958, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12640
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:5487 original size:61 final size:61

Alignment explanation


    Indices: 5392--5513  Score: 235
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       5382 AGTGCCCTAT

                                   *                                     
       5392 GTCTTGTAACAACTATGTAAATGTAACTTAGAATTAATTTGAACAAAATTTTCAAACCCAC
          1 GTCTTGTAACAACTATGTAAATGCAACTTAGAATTAATTTGAACAAAATTTTCAAACCCAC

                                                                         
       5453 GTCTTGTAACAACTATGTAAATGCAACTTAGAATTAATTTGAACAAAATTTTCAAACCCAC
          1 GTCTTGTAACAACTATGTAAATGCAACTTAGAATTAATTTGAACAAAATTTTCAAACCCAC

       5514 AAGTGTAACA


Statistics
Matches: 60,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  61   60  1.00

ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32


Consensus pattern (61 bp):   
GTCTTGTAACAACTATGTAAATGCAACTTAGAATTAATTTGAACAAAATTTTCAAACCCAC
Done.