Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018928.1 Corchorus olitorius cultivar O-4 contig18961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38117

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1113--1246
67
2.0
65
91
2
214
49
10
11
28
1.73
2064--2099
2
18.0
2
100
0
72
50
50
0
0
1.00
2099--2128
2
15.0
2
100
0
60
50
0
0
50
1.00
3743--3873
60
2.2
60
92
0
217
35
17
17
29
1.93
3776--3879
31
3.4
31
67
15
99
38
18
17
25
1.92
3921--4081
60
2.7
60
90
0
252
27
18
18
36
1.94
3918--4082
31
5.5
30
70
15
126
27
18
19
35
1.95
11123--11985
60
14.5
60
92
1
1380
25
16
15
41
1.88
11124--11985
119
7.2
119
94
0
1404
25
16
16
41
1.88
12300--12567
29
9.2
29
83
0
311
19
18
23
39
1.92
12301--12590
87
3.3
87
85
0
364
18
18
22
40
1.91
17570--17614
23
2.0
22
83
12
56
55
4
11
28
1.54
20254--20327
29
2.6
28
87
8
98
40
28
12
18
1.87
22423--22503
39
2.0
40
92
2
137
50
8
3
37
1.51
22639--23209
204
2.8
204
97
1
1062
35
11
8
44
1.71
28480--28532
14
3.7
14
80
10
54
32
3
24
39
1.73
28480--28532
13
3.8
13
82
12
52
32
3
24
39
1.73
34328--34402
28
2.7
28
84
12
84
36
14
18
30
1.91

Tables:   1

The End!