Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018932.1 Corchorus olitorius cultivar O-4 contig18965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35389

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5927--6012
31
2.8
31
81
0
100
37
25
19
17
1.94
5998--6037
20
2.0
20
85
5
53
40
12
20
27
1.88
12454--12512
25
2.4
25
82
5
66
57
28
5
8
1.50
15370--15476
31
3.5
30
74
5
108
25
20
20
33
1.97
15528--15574
23
2.0
24
87
4
69
29
14
6
48
1.69
15798--15861
32
2.0
32
84
6
85
25
12
29
32
1.92
25721--25760
6
6.8
6
94
5
73
35
15
0
50
1.44
26779--26817
20
2.0
20
85
10
53
28
5
2
64
1.28
26994--27208
22
9.7
21
70
9
115
34
8
17
38
1.81
27226--27641
22
18.6
22
68
13
134
38
9
15
36
1.80
27312--27374
23
2.8
23
85
4
94
31
7
15
44
1.76
27448--27668
22
9.9
23
73
10
86
41
9
13
35
1.78
27475--27641
66
2.5
65
76
13
155
41
9
12
36
1.76
27752--28225
22
21.8
22
66
16
118
37
10
15
36
1.82
27752--28009
22
12.0
22
71
15
123
39
9
15
35
1.81
34981--35018
16
2.4
16
87
12
53
7
15
39
36
1.77

Tables:   1

The End!