Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018933.1 Corchorus olitorius cultivar O-4 contig18966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31144

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--162
16
4.7
17
76
11
79
7
11
39
40
1.71
171--211
16
2.5
17
76
15
50
4
14
36
43
1.67
644--749
53
2.0
53
98
0
203
21
7
18
51
1.70
1024--1048
1
25.0
1
100
0
50
100
0
0
0
0.00
3818--3842
1
25.0
1
100
0
50
100
0
0
0
0.00
5881--5924
21
2.0
22
86
4
63
59
9
2
29
1.41
11570--11604
16
2.2
16
94
0
61
62
11
14
11
1.54
13281--13331
22
2.2
24
83
16
72
41
0
0
58
0.98
13281--13329
25
2.0
25
84
8
64
40
0
0
59
0.98
18814--18868
25
2.2
25
90
3
85
43
20
3
32
1.69
20260--20293
2
17.0
2
100
0
68
50
0
0
50
1.00
20546--20584
2
21.5
2
80
19
50
46
0
0
53
1.00
20549--20597
15
3.3
15
81
16
57
44
4
0
51
1.20
20547--20583
5
7.0
5
96
3
56
43
0
0
56
0.99
27426--27471
24
2.0
22
83
8
56
54
0
0
45
0.99
27426--27475
25
2.1
24
85
14
68
54
0
0
46
1.00
27579--27639
29
2.1
30
87
3
88
42
3
3
50
1.34
29382--29423
14
3.2
14
80
12
54
61
7
0
30
1.22

Tables:   1

The End!