Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018934.1 Corchorus olitorius cultivar O-4 contig18967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100010

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6367--6439
31
2.4
29
79
4
83
41
16
20
21
1.90
7864--7914
26
2.0
24
85
7
66
23
31
11
33
1.91
9008--9093
42
2.0
42
95
0
154
27
5
38
27
1.80
11133--11318
90
2.0
90
93
4
318
28
17
10
43
1.82
15174--15200
13
2.1
13
100
0
54
51
33
0
14
1.43
16711--16761
22
2.3
22
83
6
59
41
9
9
39
1.71
30479--30521
22
2.0
22
95
0
77
37
16
4
41
1.69
33361--33421
27
2.3
27
83
16
74
47
0
4
47
1.23
34445--34533
25
3.5
25
83
8
108
49
15
4
30
1.65
37472--37510
14
2.9
13
80
3
51
53
2
2
41
1.28
37496--37752
125
2.0
127
88
7
387
50
1
10
36
1.49
81057--81105
22
2.2
22
78
14
55
38
0
4
57
1.18
81066--81106
22
1.9
22
90
5
66
41
0
4
53
1.22
95970--96046
40
1.9
40
100
0
154
31
7
12
48
1.70
97614--97656
13
3.5
13
81
18
65
0
44
0
55
0.99
97874--97908
4
8.8
4
100
0
70
25
0
22
51
1.48

Tables:   1

The End!