Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018935.1 Corchorus olitorius cultivar O-4 contig18968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51278

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
749--1045
22
13.3
22
68
16
114
38
10
16
34
1.83
899--959
21
2.8
21
82
9
61
42
8
11
37
1.71
1129--1232
44
2.4
45
80
7
117
33
11
15
39
1.83
1083--1232
65
2.3
66
78
8
153
34
9
18
38
1.82
1129--1232
22
4.8
22
77
5
104
33
11
15
39
1.83
25146--25203
30
1.9
30
100
0
116
27
29
20
22
1.99
27836--27899
21
3.2
20
82
8
76
35
10
21
31
1.88
30518--30549
1
32.0
1
100
0
64
0
0
0
100
0.00
36892--36940
26
1.9
26
84
12
66
44
0
0
55
0.99
38776--38803
13
2.2
13
100
0
56
46
7
0
46
1.30
38913--38954
19
2.3
18
84
8
57
61
0
4
33
1.17
39555--39585
2
15.5
2
100
0
62
51
0
0
48
1.00
42574--42619
15
3.1
15
93
0
74
45
0
0
54
0.99
42574--42619
4
12.2
4
77
13
53
45
0
0
54
0.99
42770--43421
22
30.2
21
69
14
271
35
16
9
38
1.81
43085--43244
82
1.9
84
83
2
207
34
16
7
41
1.76
43459--43538
22
3.6
22
71
6
72
36
13
8
41
1.76
43523--43583
22
2.7
23
82
5
72
34
4
11
49
1.61
43434--43600
88
1.9
88
81
4
203
35
11
9
43
1.73
43669--43722
20
2.8
20
91
8
85
48
12
0
38
1.42
47323--47352
14
2.1
14
100
0
60
46
6
6
40
1.56
50227--50288
25
2.6
24
87
5
81
59
4
6
29
1.43

Tables:   1

The End!