Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018936.1 Corchorus olitorius cultivar O-4 contig18969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42344

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9323--9365
21
2.0
23
86
9
63
20
23
11
44
1.84
12697--13019
41
7.9
41
88
3
427
29
13
19
37
1.90
17356--17394
12
2.9
15
71
28
50
35
5
5
53
1.45
20559--20617
31
1.9
31
92
0
100
25
18
8
47
1.77
25010--25042
16
2.1
16
88
5
50
78
3
15
3
0.99
27183--27220
7
5.7
7
87
12
62
57
0
0
42
0.98
27183--27218
12
3.0
13
80
19
51
58
0
0
41
0.98
29996--30044
23
2.1
23
88
0
71
32
8
16
42
1.77
32593--32654
21
3.0
21
97
2
117
51
19
14
14
1.76
38590--38638
15
3.3
15
82
0
62
46
2
44
6
1.39
39786--39844
16
3.7
16
77
6
57
5
37
1
55
1.32
39863--39922
16
3.8
16
82
6
59
56
1
36
5
1.31
39863--39908
17
2.9
16
87
6
58
60
2
30
6
1.34

Tables:   1

The End!