Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018937.1 Corchorus olitorius cultivar O-4 contig18970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2226
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27


Found at i:1847 original size:37 final size:37

Alignment explanation


    Indices: 1792--1865  Score: 121
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1782 CATCTAACCT

                *                *               
       1792 TGTTTCAAGCACGAAATTGAGGTGAAGATCAAAATCG
          1 TGTTCCAAGCACGAAATTGAGATGAAGATCAAAATCG

                                          *      
       1829 TGTTCCAAGCACGAAATTGAGATGAAGATCGAAATCG
          1 TGTTCCAAGCACGAAATTGAGATGAAGATCAAAATCG

       1866 AATTGACGAG


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  37   34  1.00

ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23


Consensus pattern (37 bp):   
TGTTCCAAGCACGAAATTGAGATGAAGATCAAAATCG
Done.