Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018938.1 Corchorus olitorius cultivar O-4 contig18971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10756
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Found at i:2191 original size:14 final size:14

Alignment explanation


    Indices: 2172--2214  Score: 59
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       2162 CACAAATACC

                          
       2172 TGGAAATTACCGAT
          1 TGGAAATTACCGAT

                    * **  
       2186 TGGAAATTGCATAT
          1 TGGAAATTACCGAT

                          
       2200 TGGAAATTACCGAT
          1 TGGAAATTACCGAT

             
       2214 T
          1 T

       2215 AAAGGAGAAG


Statistics
Matches: 23,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33


Consensus pattern (14 bp):   
TGGAAATTACCGAT
Done.