Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018940.1 Corchorus olitorius cultivar O-4 contig18973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18965

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2358--2390
14
2.3
15
94
5
59
48
12
0
39
1.40
2602--2680
18
4.5
18
69
19
60
26
16
0
56
1.40
4415--4577
22
7.4
22
66
16
61
36
16
9
37
1.81
4497--4626
22
5.9
22
72
12
81
36
17
8
36
1.81
4566--4635
22
3.2
21
79
18
65
40
17
7
35
1.77
4707--4764
23
2.5
23
91
0
89
44
12
5
37
1.64
4707--4937
22
10.7
22
71
13
115
37
17
7
38
1.78
5054--5174
44
2.8
43
75
10
111
38
8
14
38
1.77
5104--5174
22
3.3
22
83
13
78
42
8
12
36
1.73
10941--10976
18
1.9
18
88
5
54
38
2
22
36
1.69
18031--18060
12
2.4
12
94
5
51
73
0
10
16
1.09
18652--18709
19
2.9
19
82
5
71
29
20
12
37
1.89

Tables:   1

The End!