Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018941.1 Corchorus olitorius cultivar O-4 contig18974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21496
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Found at i:2858 original size:13 final size:13
Alignment explanation
Indices: 2840--2867 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2830 TTGGCATGAA
2840 TGATGATTTTTGT
1 TGATGATTTTTGT
2853 TGATGATTTTTGT
1 TGATGATTTTTGT
2866 TG
1 TG
2868 CTACCTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.25, T:0.61
Consensus pattern (13 bp):
TGATGATTTTTGT
Found at i:4551 original size:22 final size:22
Alignment explanation
Indices: 4503--4551 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
4493 CCCGAGAAAT
* *
4503 CAAAAACCAGATCCTGCAGCTA
1 CAAACACCAGATCCTACAGCTA
*
4525 CAAACACCAGCTCCTACAGCTA
1 CAAACACCAGATCCTACAGCTA
4547 CAAAC
1 CAAAC
4552 TTGCTCCGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.37, G:0.10, T:0.12
Consensus pattern (22 bp):
CAAACACCAGATCCTACAGCTA
Found at i:7767 original size:23 final size:23
Alignment explanation
Indices: 7737--7816 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
7727 CCTCGGTATG
*
7737 AAATTTTGATAAACATTCATATA
1 AAATTTTGATAAACATCCATATA
* *
7760 AAATTTTGATAAACCTCCCTATA
1 AAATTTTGATAAACATCCATATA
* * * *
7783 AAATTATGAT-AACCTCCTTATG
1 AAATTTTGATAAACATCCATATA
*
7805 AGATTTTGATAA
1 AAATTTTGATAA
7817 TCAAAAATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.38
23 30 0.62
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (23 bp):
AAATTTTGATAAACATCCATATA
Found at i:7814 original size:22 final size:22
Alignment explanation
Indices: 7737--7985 Score: 137
Period size: 22 Copynumber: 11.7 Consensus size: 22
7727 CCTCGGTATG
* * *
7737 AAATTTTGATAAACATTCATATA
1 AAATTTTGAT-AACCTCCCTATA
7760 AAATTTTGATAAACCTCCCTATA
1 AAATTTTGAT-AACCTCCCTATA
* * *
7783 AAATTATGATAACCTCCTTATG
1 AAATTTTGATAACCTCCCTATA
*
7805 AGATTTTGATAA--T--C-A-A
1 AAATTTTGATAACCTCCCTATA
7821 AAATTTTGATAACCTCCCTAT-
1 AAATTTTGATAACCTCCCTATA
* * * * *
7842 GATTTTTCGATAA-CTTCATATG
1 AAATTTT-GATAACCTCCCTATA
* ** *
7864 AAATTTTGTTAACAACCCTATG
1 AAATTTTGATAACCTCCCTATA
7886 AAATTTTGATAA-C-CCCTATA
1 AAATTTTGATAACCTCCCTATA
* * ** *
7906 AAAATTTGA-AAACTAAACTATG
1 AAATTTTGATAACCT-CCCTATA
* *
7928 AAATTTTGATATCCTCCCTATG
1 AAATTTTGATAACCTCCCTATA
* *
7950 AAATTTTGATAATC-CCCTTTA
1 AAATTTTGATAACCTCCCTATA
7971 AAA-TTTGAATAACCT
1 AAATTTTG-ATAACCT
7986 TCATACGAAA
Statistics
Matches: 172, Mismatches: 39, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
16 11 0.06
17 1 0.01
18 1 0.01
19 2 0.01
20 21 0.12
21 29 0.17
22 75 0.44
23 32 0.19
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (22 bp):
AAATTTTGATAACCTCCCTATA
Found at i:7947 original size:64 final size:64
Alignment explanation
Indices: 7860--7979 Score: 179
Period size: 64 Copynumber: 1.9 Consensus size: 64
7850 GATAACTTCA
*
7860 TATGAAATTTTGTTAACAACCCTATGAAATTTTGATAA-CCCCTATAAAAATTTGAAAACTAAAC
1 TATGAAATTTTGATAACAACCCTATGAAATTTTGATAATCCCCT-TAAAAATTTGAAAACTAAAC
* ** *
7924 TATGAAATTTTGATATCCTCCCTATGAAATTTTGATAATCCCCTTTAAAATTTGAA
1 TATGAAATTTTGATAACAACCCTATGAAATTTTGATAATCCCCTTAAAAATTTGAA
7980 TAACCTTCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
64 45 0.90
65 5 0.10
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (64 bp):
TATGAAATTTTGATAACAACCCTATGAAATTTTGATAATCCCCTTAAAAATTTGAAAACTAAAC
Found at i:8261 original size:22 final size:22
Alignment explanation
Indices: 8122--8418 Score: 132
Period size: 22 Copynumber: 13.5 Consensus size: 22
8112 CTAACATCTC
* *
8122 TATGAAATTTTGATAATCAT-A
1 TATGAAATTTTGATAACCTTCA
* *
8143 CTGTGAAA-TTTGA-AACCTCCA
1 -TATGAAATTTTGATAACCTTCA
* * *
8164 TATGAAATTTTAATAATC-ACAA
1 TATGAAATTTTGATAACCTTC-A
* *
8186 TATGAGATTTTTTCATAA-CTTCA
1 TATGA-A-ATTTTGATAACCTTCA
** ***
8209 CTGGGAAATTTTGATAACCTGGT
1 -TATGAAATTTTGATAACCTTCA
* * *
8232 TTTAAAATTTTGATAACCTTTA
1 TATGAAATTTTGATAACCTTCA
*
8254 TATGAAA-TTTGATAACC-ACA
1 TATGAAATTTTGATAACCTTCA
*
8274 TCATG-AATTTTGATAACCTTCC
1 T-ATGAAATTTTGATAACCTTCA
* *
8296 TATGAAATTTTGGTAACCTGATCTC
1 TATGAAATTTTGATAACCT--TC-A
*
8321 TATGAATTTTTGATAA-CTACTC-
1 TATGAAATTTTGATAACCT--TCA
* ** *
8343 TATGAGATTTTGAT-TGCTTCC
1 TATGAAATTTTGATAACCTTCA
*
8364 TGATGAAATTTTGATAA-CTACA
1 T-ATGAAATTTTGATAACCTTCA
* *
8386 CTATAAAATTTTGATATCCTTCA
1 -TATGAAATTTTGATAACCTTCA
8409 TATGAAATTT
1 TATGAAATTT
8419 AGATTTTTCT
Statistics
Matches: 207, Mismatches: 46, Indels: 44
0.70 0.15 0.15
Matches are distributed among these distances:
20 15 0.07
21 38 0.18
22 110 0.53
23 11 0.05
24 18 0.09
25 15 0.07
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCA
Found at i:8331 original size:25 final size:24
Alignment explanation
Indices: 8239--8353 Score: 90
Period size: 21 Copynumber: 5.1 Consensus size: 24
8229 GGTTTTAAAA
*
8239 TTTTGATAACCT-T-TATATGAA-
1 TTTTGATAACCTATCTCTATGAAT
*
8260 ATTTGATAACC-A-CATC-ATGAA-
1 TTTTGATAACCTATC-TCTATGAAT
*
8281 TTTTGATAACCT-TC-CTATGAAA
1 TTTTGATAACCTATCTCTATGAAT
*
8303 TTTTGGTAACCTGATCTCTATGAAT
1 TTTTGATAACCT-ATCTCTATGAAT
8328 TTTTGATAA-CTA-CTCTATGAGAT
1 TTTTGATAACCTATCTCTATGA-AT
8351 TTT
1 TTT
8354 GATTGCTTCC
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.01
21 30 0.39
22 21 0.27
23 6 0.08
24 4 0.05
25 15 0.19
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (24 bp):
TTTTGATAACCTATCTCTATGAAT
Found at i:8494 original size:22 final size:21
Alignment explanation
Indices: 8458--8545 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 21
8448 GGTAATCACA
8458 CTATGAAATCTTTGATAACCTC
1 CTATGAAAT-TTTGATAACCTC
* *
8480 CTTATAAAATTTTGATAACCACC
1 C-TATGAAATTTTGATAACC-TC
* *
8503 CTATGAGATTCTGATAACCTC
1 CTATGAAATTTTGATAACCTC
*
8524 GCTATGGAATTTTGATAACCTC
1 -CTATGAAATTTTGATAACCTC
8546 TTTTATAACC
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.02
22 44 0.81
23 9 0.17
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (21 bp):
CTATGAAATTTTGATAACCTC
Found at i:8575 original size:22 final size:22
Alignment explanation
Indices: 8546--8687 Score: 128
Period size: 22 Copynumber: 6.4 Consensus size: 22
8536 TGATAACCTC
*
8546 TTTT-ATAACCTCCCTATGAAA
1 TTTTGATAACCTCACTATGAAA
* *
8567 TTTTGATAACCACACTATAAAA
1 TTTTGATAACCTCACTATGAAA
*
8589 TTTTGATAACTTTC-CTATGAAA
1 TTTTGATAAC-CTCACTATGAAA
*
8611 TTTTGATAACCTAATCCATATGAAA
1 TTTTGATAACCTCA--C-TATGAAA
* *
8636 TTTT-ATAACCACACTGTGAAA
1 TTTTGATAACCTCACTATGAAA
* * * *
8657 TTTTGATTACCTCAGTGTAAAA
1 TTTTGATAACCTCACTATGAAA
8679 TTTTGATAA
1 TTTTGATAA
8688 TCACAGTATA
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
21 15 0.15
22 63 0.64
23 1 0.01
24 8 0.08
25 11 0.11
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (22 bp):
TTTTGATAACCTCACTATGAAA
Found at i:8591 original size:56 final size:57
Alignment explanation
Indices: 8489--8598 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 57
8479 CCTTATAAAA
* * * **
8489 TTTTGATAACCACCCTATGAGATTCTGATAACCTCGCTATGGAATTTTGATAACCTC
1 TTTTGATAACCACCCTATGAAATTCTGATAACCACACTATAAAATTTTGATAACCTC
* *
8546 TTTT-ATAACCTCCCTATGAAATTTTGATAACCACACTATAAAATTTTGATAAC
1 TTTTGATAACCACCCTATGAAATTCTGATAACCACACTATAAAATTTTGATAAC
8599 TTTCCTATGA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
56 42 0.91
57 4 0.09
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (57 bp):
TTTTGATAACCACCCTATGAAATTCTGATAACCACACTATAAAATTTTGATAACCTC
Found at i:8596 original size:78 final size:78
Alignment explanation
Indices: 8466--8622 Score: 217
Period size: 78 Copynumber: 2.0 Consensus size: 78
8456 CACTATGAAA
* * * *
8466 TCTTTGATAACCTCCTTATAAAATTTTGATAACCACCCTATGAGATTCTGATAAC-CTCGCTATG
1 TCTTTGATAACCTCCCTATAAAATTTTGATAACCACACTATAAAATTCTGATAACTCTC-CTATG
*
8530 GAATTTTGATAACC
65 AAATTTTGATAACC
* * * *
8544 TCTTTTATAACCTCCCTATGAAATTTTGATAACCACACTATAAAATTTTGATAACTTTCCTATGA
1 TCTTTGATAACCTCCCTATAAAATTTTGATAACCACACTATAAAATTCTGATAACTCTCCTATGA
8609 AATTTTGATAACC
66 AATTTTGATAACC
8622 T
1 T
8623 AATCCATATG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.38
Consensus pattern (78 bp):
TCTTTGATAACCTCCCTATAAAATTTTGATAACCACACTATAAAATTCTGATAACTCTCCTATGA
AATTTTGATAACC
Found at i:8680 original size:68 final size:69
Alignment explanation
Indices: 8560--8687 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 69
8550 ATAACCTCCC
* *
8560 TATGAAATTTTGATAACCACACTATAAAATTTTGATAACTTTCCTATGAAATTTTGATAACCTAA
1 TATGAAATTTTGATAACCACACTATAAAATTTTGATAACTCTCCTATAAAATTTTGATAACCTAA
8625 TCCA
66 TCCA
* * * * *
8629 TATGAAATTTT-ATAACCACACTGTGAAATTTTGATTAC-CTCAGTGTAAAATTTTGATAA
1 TATGAAATTTTGATAACCACACTATAAAATTTTGATAACTCTC-CTATAAAATTTTGATAA
8688 TCACAGTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 2 0.04
68 38 0.75
69 11 0.22
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (69 bp):
TATGAAATTTTGATAACCACACTATAAAATTTTGATAACTCTCCTATAAAATTTTGATAACCTAA
TCCA
Found at i:8694 original size:22 final size:22
Alignment explanation
Indices: 8633--8702 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
8623 AATCCATATG
* *
8633 AAATTTT-ATAACCACACTGTG
1 AAATTTTGATAACCACAGTGTA
* *
8654 AAATTTTGATTACCTCAGTGTA
1 AAATTTTGATAACCACAGTGTA
* *
8676 AAATTTTGATAATCACAGTATA
1 AAATTTTGATAACCACAGTGTA
8698 AAATT
1 AAATT
8703 GGTAACCGCA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 7 0.17
22 33 0.82
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (22 bp):
AAATTTTGATAACCACAGTGTA
Found at i:8733 original size:19 final size:20
Alignment explanation
Indices: 8681--8736 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
8671 GTGTAAAATT
*
8681 TTGATAATCACAGTATAAAA
1 TTGATAATCACACTATAAAA
* * * *
8701 TTGGTAACCGCACTAT-CAA
1 TTGATAATCACACTATAAAA
8720 TTGATAATCACACTATA
1 TTGATAATCACACTATA
8737 TTTTTATACA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (20 bp):
TTGATAATCACACTATAAAA
Found at i:9016 original size:26 final size:27
Alignment explanation
Indices: 8986--9039 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
8976 CTATTCTCAA
8986 TTAATTAAATCTAATATACTTA-AAAT
1 TTAATTAAATCTAATATACTTATAAAT
9012 TTAATTAAATCTAATATACTTATAAAT
1 TTAATTAAATCTAATATACTTATAAAT
9039 T
1 T
9040 CTATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (27 bp):
TTAATTAAATCTAATATACTTATAAAT
Found at i:9353 original size:21 final size:21
Alignment explanation
Indices: 9329--9374 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
9319 CTGTATGGTT
*
9329 ATTAAAAAATTTCATTGTGAG
1 ATTAAAAAATTTCATGGTGAG
** *
9350 ATTATCAACTTTCATGGTGAG
1 ATTAAAAAATTTCATGGTGAG
9371 ATTA
1 ATTA
9375 CCAAGCTTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (21 bp):
ATTAAAAAATTTCATGGTGAG
Found at i:9386 original size:22 final size:21
Alignment explanation
Indices: 9338--9387 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
9328 TATTAAAAAA
* *
9338 TTTCATTGTGAGATTATCAAC
1 TTTCATGGTGAGATTACCAAC
9359 TTTCATGGTGAGATTACCAAGC
1 TTTCATGGTGAGATTACCAA-C
9381 TTTCATG
1 TTTCATG
9388 AGGAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (21 bp):
TTTCATGGTGAGATTACCAAC
Found at i:9511 original size:23 final size:22
Alignment explanation
Indices: 9456--9640 Score: 155
Period size: 22 Copynumber: 8.4 Consensus size: 22
9446 TTGTTTGGTA
* *
9456 ATCAAAATTTCATAATGAGATT
1 ATCAAAATTTCATAAGGAGGTT
9478 ATCAAAATTTCATAAGGAGGTT
1 ATCAAAATTTCATAAGGAGGTT
9500 ATCAAAAATTTCATAAGGAGGTT
1 ATC-AAAATTTCATAAGGAGGTT
**
9523 ATCAAAATTTCAT-AGTCTGGTT
1 ATCAAAATTTCATAAG-GAGGTT
* * **
9545 A-CCAAATTTTATTGGGAGGTT
1 ATCAAAATTTCATAAGGAGGTT
* * * *
9566 ATAAAAAATTCA-AACTGTGGTT
1 ATCAAAATTTCATAA-GGAGGTT
* * *
9588 ACCAAAATTTCAGAAGAAGGTT
1 ATCAAAATTTCATAAGGAGGTT
9610 ATCAAAATTTCAT-A-GAGTGATT
1 ATCAAAATTTCATAAGGAG-G-TT
9632 ATCAAAATT
1 ATCAAAATT
9641 ATAGGGATTA
Statistics
Matches: 129, Mismatches: 26, Indels: 16
0.75 0.15 0.09
Matches are distributed among these distances:
20 2 0.02
21 18 0.14
22 85 0.66
23 24 0.19
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (22 bp):
ATCAAAATTTCATAAGGAGGTT
Found at i:9566 original size:43 final size:44
Alignment explanation
Indices: 9458--9624 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 44
9448 GTTTGGTAAT
* * * **
9458 CAAAATTTCATAATGAGATTATCAAAATTTCATAAG-GAGGTTATC
1 CAAAATTTCAGAAGGAGGTTATCAAAATTTCAT-AGTCTGGTTA-C
* *
9503 AAAAATTTCATAAGGAGGTTATCAAAATTTCATAGTCTGGTTAC
1 CAAAATTTCAGAAGGAGGTTATCAAAATTTCATAGTCTGGTTAC
* *** * * * * *
9547 C-AAATTTTATTGGGAGGTTATAAAAAATTCAAACTGTGGTTAC
1 CAAAATTTCAGAAGGAGGTTATCAAAATTTCATAGTCTGGTTAC
*
9590 CAAAATTTCAGAAGAAGGTTATCAAAATTTCATAG
1 CAAAATTTCAGAAGGAGGTTATCAAAATTTCATAG
9625 AGTGATTATC
Statistics
Matches: 97, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
43 35 0.36
44 27 0.28
45 35 0.36
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (44 bp):
CAAAATTTCAGAAGGAGGTTATCAAAATTTCATAGTCTGGTTAC
Found at i:9739 original size:22 final size:22
Alignment explanation
Indices: 9711--9815 Score: 84
Period size: 22 Copynumber: 4.8 Consensus size: 22
9701 CAAAAGACTA
9711 TGGTTATCAAAATTTCACAGTG
1 TGGTTATCAAAATTTCACAGTG
* * * * *
9733 TGGTTATCAGATTTTAATAGAG
1 TGGTTATCAAAATTTCACAGTG
* * * * *
9755 AGGGTATCGAAATTTCATAATG
1 TGGTTATCAAAATTTCACAGTG
** *
9777 AAGTTATCAAATTTTCACAGTG
1 TGGTTATCAAAATTTCACAGTG
*
9799 TGGTTATCAATATTTCA
1 TGGTTATCAAAATTTCA
9816 ACGTTGGAGC
Statistics
Matches: 60, Mismatches: 23, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (22 bp):
TGGTTATCAAAATTTCACAGTG
Found at i:19950 original size:28 final size:28
Alignment explanation
Indices: 19918--19974 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
19908 GTTGCGAATA
19918 TCAGCTGCATGCAGGAGATGTTGAGTTC
1 TCAGCTGCATGCAGGAGATGTTGAGTTC
19946 TCAGCTGCATGCAGGAGATGTTGAGTTC
1 TCAGCTGCATGCAGGAGATGTTGAGTTC
19974 T
1 T
19975 ATGTAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.30
Consensus pattern (28 bp):
TCAGCTGCATGCAGGAGATGTTGAGTTC
Done.