Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018942.1 Corchorus olitorius cultivar O-4 contig18975, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65713

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1058--1092
13
2.8
12
91
8
61
40
8
0
51
1.33
15888--16005
30
3.9
30
85
9
127
1
40
30
27
1.66
15902--16105
27
7.4
27
81
5
185
3
38
30
26
1.75
19785--19826
14
3.2
14
80
12
54
30
0
7
61
1.22
24670--24711
14
3.2
14
80
12
54
30
0
7
61
1.22
26498--26539
21
1.9
22
85
9
59
47
2
0
50
1.14
28621--28655
11
3.2
11
87
0
52
14
5
20
60
1.54
30932--31109
91
2.0
87
93
4
302
37
7
4
50
1.52
33665--33705
2
20.0
2
95
5
73
48
0
2
48
1.14
34913--34951
15
2.6
15
87
0
51
7
12
0
79
0.93
34963--35223
106
2.5
105
91
2
409
40
8
9
42
1.67
35607--35721
57
2.0
56
98
1
221
33
26
1
39
1.66
36208--36259
25
2.1
24
96
3
95
34
9
21
34
1.86
46561--46606
19
2.6
17
87
12
74
69
6
10
13
1.35
46567--46606
19
2.1
19
100
0
80
75
5
10
10
1.19
48749--48790
11
3.8
11
93
6
68
16
35
35
11
1.86
48749--48793
5
8.0
6
77
22
53
15
35
35
13
1.87
49221--49383
50
3.3
50
89
3
238
35
23
10
30
1.89
52952--52977
2
13.0
2
100
0
52
50
0
0
50
1.00
52881--53324
211
2.1
215
88
4
659
38
7
13
41
1.72
61270--61585
128
2.6
119
80
9
343
38
18
19
23
1.93
65351--65683
60
5.4
62
89
1
264
33
17
17
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65416--65709
30
9.7
30
90
0
435
32
18
18
30
1.95
65348--65709
90
3.9
90
84
2
436
33
17
17
31
1.93

Tables:   1

The End!