Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018946.1 Corchorus olitorius cultivar O-4 contig18979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69343
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Found at i:2070 original size:15 final size:16
Alignment explanation
Indices: 2042--2083 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
2032 TTCTAGTAGA
2042 GAATTTTGGGAGGTTC
1 GAATTTTGGGAGGTTC
2058 GAATTTT-GGAGGTT-
1 GAATTTTGGGAGGTTC
2072 GAGA-TTTGGGAG
1 GA-ATTTTGGGAG
2084 AGGGAAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.21
15 12 0.50
16 7 0.29
ACGTcount: A:0.21, C:0.02, G:0.40, T:0.36
Consensus pattern (16 bp):
GAATTTTGGGAGGTTC
Found at i:2285 original size:12 final size:14
Alignment explanation
Indices: 2257--2294 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
2247 GGCGCAAGGA
2257 GGAAGAAGAAGAAG
1 GGAAGAAGAAGAAG
2271 GGAAG-AGAA-AAG
1 GGAAGAAGAAGAAG
2283 GGAAGCAAGAAG
1 GGAAG-AAGAAG
2295 CGGAGGGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.38
13 4 0.19
14 9 0.43
ACGTcount: A:0.55, C:0.03, G:0.42, T:0.00
Consensus pattern (14 bp):
GGAAGAAGAAGAAG
Found at i:3296 original size:34 final size:34
Alignment explanation
Indices: 3258--3479 Score: 176
Period size: 34 Copynumber: 6.1 Consensus size: 34
3248 AAGAATTTCG
*
3258 TCAGGTTTAAGCTTTCAAATTGGGAAAGTTCCCA
1 TCAGGTTTAAGTTTTCAAATTGGGAAAGTTCCCA
*
3292 TCAGGTTTTAGTTTTCAAATTGGGAAAGTTCCCA
1 TCAGGTTTAAGTTTTCAAATTGGGAAAGTTCCCA
** *
3326 TCGAATTTTTAAGTTTTCAAATTGCGAAAGTTCCCA
1 TC--AGGTTTAAGTTTTCAAATTGGGAAAGTTCCCA
* *
3362 CCAAGTTTTTTTTTAAAGTTTTCAAATTGGGAAAGTTCCCA
1 TC-AG-----GTTT-AAGTTTTCAAATTGGGAAAGTTCCCA
* * * *
3403 CCTGGTTTTAGTTTTCAATTTAGGGAAAGTTCCCGTCA
1 TCAGGTTTAAGTTTTCAAATT-GGGAAAGTT-CC--CA
* *
3441 TTTTCAGCTTT-AGTTTTCAAAATGGGAAAGTTCCCA
1 ---TCAGGTTTAAGTTTTCAAATTGGGAAAGTTCCCA
3477 TCA
1 TCA
3480 AAAAAATATT
Statistics
Matches: 155, Mismatches: 18, Indels: 31
0.76 0.09 0.15
Matches are distributed among these distances:
33 3 0.02
34 45 0.29
35 14 0.09
36 33 0.21
38 4 0.03
39 9 0.06
40 15 0.10
41 32 0.21
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (34 bp):
TCAGGTTTAAGTTTTCAAATTGGGAAAGTTCCCA
Found at i:3355 original size:70 final size:73
Alignment explanation
Indices: 3263--3402 Score: 187
Period size: 70 Copynumber: 1.9 Consensus size: 73
3253 TTTCGTCAGG
* *
3263 TTTAAGCTTTCAAATTGGGAAAGTTCCCATC-AG-GTTTT-AGTTTTCAAATTGGGAAAGTTCCC
1 TTTAAGCTTTCAAATTGCGAAAGTTCCCACCAAGTGTTTTAAGTTTTCAAATTGGGAAAGTTCCC
3325 ATCGAATT
66 ATCGAATT
* *
3333 TTTAAGTTTTCAAATTGCGAAAGTTCCCACCAAGTTTTTTTTTAAAGTTTTCAAATTGGGAAAGT
1 TTTAAGCTTTCAAATTGCGAAAGTTCCCACCAAG---TGTTTT-AAGTTTTCAAATTGGGAAAGT
3398 TCCCA
62 TCCCA
3403 CCTGGTTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
70 28 0.47
71 2 0.03
75 4 0.07
77 25 0.42
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (73 bp):
TTTAAGCTTTCAAATTGCGAAAGTTCCCACCAAGTGTTTTAAGTTTTCAAATTGGGAAAGTTCCC
ATCGAATT
Found at i:3411 original size:41 final size:40
Alignment explanation
Indices: 3263--3411 Score: 138
Period size: 41 Copynumber: 4.0 Consensus size: 40
3253 TTTCGTCAGG
* * *
3263 TTTAAGCTTTCAAATTGGGAAAGTTCCCATC-AG----GT
1 TTTAAGTTTTCAAATTGGGAAAGTTCCCACCTAGTTTTTT
* **
3298 TTT-AGTTTTCAAATTGGGAAAGTTCCCA--TCG--AATT
1 TTTAAGTTTTCAAATTGGGAAAGTTCCCACCTAGTTTTTT
* *
3333 TTTAAGTTTTCAAATTGCGAAAGTTCCCACCAAGTTTTTT
1 TTTAAGTTTTCAAATTGGGAAAGTTCCCACCTAGTTTTTT
*
3373 TTTAAAGTTTTCAAATTGGGAAAGTTCCCACCTGGTTTT
1 TTT-AAGTTTTCAAATTGGGAAAGTTCCCACCTAGTTTT
3412 AGTTTTCAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
33 1 0.01
34 24 0.26
35 7 0.07
36 24 0.26
38 1 0.01
40 5 0.05
41 32 0.34
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (40 bp):
TTTAAGTTTTCAAATTGGGAAAGTTCCCACCTAGTTTTTT
Found at i:4833 original size:218 final size:217
Alignment explanation
Indices: 4429--5057 Score: 961
Period size: 218 Copynumber: 2.9 Consensus size: 217
4419 ATAAAAACAA
* * * * * * *
4429 TTTGGGGATATTGGATTTTGTATTTTGTTTAATTATTAGATAACGCAAAATTGATATAGACGGGG
1 TTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTAGATGACACTAAATTCATATAGACGGGG
* ** * *
4494 TTTATTCAATTAATTTGGATGAAAATATGGAACAAAACACGTTTAAAGTCAATTTTGGGAATATA
66 TTTATTCAATTAATAT-GATGAAAATATGGATTAAAACACGTTTAAAGCCAATTTTGGGTATATA
*
4559 AAAAAATGTCAATCTCTAAAAAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAAT
130 AAAAAATGTCAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAAT
* *
4624 TATTTGGGTATAAAGTATATAAG
195 GAGTTGGGTATAAAGTATATAAG
4647 TTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTAGATGACACTAAATTCATATAGACGGGG
1 TTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTAGATGACACTAAATTCATATAGACGGGG
4712 TTTATTCAATTAATATGATGAAAATATGGATTAAAACACGTTTAAAGCCAATTTTGGGTATATAA
66 TTTATTCAATTAATATGATGAAAATATGGATTAAAACACGTTTAAAGCCAATTTTGGGTATATAA
*
4777 AAAAATGTCAATCTCGAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGGATGATGAGAAAT
131 AAAAATGTCAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTT-GGGGATGATGAGAAAT
*
4842 GAGTTGGGTATAAAGTATATCAG
195 GAGTTGGGTATAAAGTATATAAG
* * * *
4865 TTTGGTGATACTGAATTTTACATTTTTTTTAATTATTAGATGACACTAAATTCATATAGACGAGG
1 TTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTAGATGACACTAAATTCATATAGACGGGG
* * *
4930 TTTATTCAATTAAATAGGATGAAAATATGGATTAAAGCACGTTTAAAACCAATTTTGGGTATATA
66 TTTATTCAATT-AATATGATGAAAATATGGATTAAAACACGTTTAAAGCCAATTTTGGGTATAT-
* * * *
4995 AGAAAAAATGTCAATCTCTAATGAATTTGGGGATGATGCTTATGATAATTTGGGGATGATGAG
129 A-AAAAAATGTCAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAG
5058 TAATATCAAG
Statistics
Matches: 378, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
217 91 0.24
218 181 0.48
219 49 0.13
220 13 0.03
221 44 0.12
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (217 bp):
TTTGGGGATACTGAATTTTGCATTTTGTTTAATTATTAGATGACACTAAATTCATATAGACGGGG
TTTATTCAATTAATATGATGAAAATATGGATTAAAACACGTTTAAAGCCAATTTTGGGTATATAA
AAAAATGTCAATCTCTAAAGAATTTGGGGATGGTGCATATGATTATTTGGGGATGATGAGAAATG
AGTTGGGTATAAAGTATATAAG
Found at i:5933 original size:25 final size:25
Alignment explanation
Indices: 5899--5948 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
5889 ATCTAATAAT
*
5899 TAAACAAAATGCAAAATTCAGTATC
1 TAAACAAAATACAAAATTCAGTATC
5924 TAAACAAAATACAAAATTCAGTATC
1 TAAACAAAATACAAAATTCAGTATC
5949 CCCAAAGCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.54, C:0.16, G:0.06, T:0.24
Consensus pattern (25 bp):
TAAACAAAATACAAAATTCAGTATC
Found at i:6396 original size:220 final size:223
Alignment explanation
Indices: 5924--6501 Score: 824
Period size: 220 Copynumber: 2.6 Consensus size: 223
5914 ATTCAGTATC
* ** * *
5924 TAAACAAAATACAAAATTCAGTATCCCCAAAGCAGTATACTTTATACCTAAATCATTTCTCATCA
1 TAAACAAAATGCAAAATTCAGTATCCCCAAAATAATATACTTTATACCCAAATCATTTCTCATCA
*
5989 T-CCCAAATAATCATATGCA-CATCCCTAAATTCTTTAGAGATTGACATTTTTTCTCATATACCC
66 TCCCCAAATAATCATATGCATCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCATATACCC
*
6052 AAAATTGACTTTAAAATGTGCTTTAATCCATATTTTTCATTCATCCTAATTAATTAAATAAACCC
131 AAAATTGACTTTAAAACGTGCTTTAATCCATA--TTT-ATTCATCCTAATTAATTAAATAAACCC
* * * *
6117 CGTCAATATGATTTTAGTGCCATCTAATATT
193 CATCAATATGAATTTAGTGCCATATAATAAT
*
6148 TAAACAAAATGCAAAATTCAGTATCCCCAAAATAATATACTTTATACCCAAATCATTTCTCATTA
1 TAAACAAAATGCAAAATTCAGTATCCCCAAAATAATATACTTTATACCCAAATCATTTCTCATCA
* * *
6213 TCCCCAAATAATTATATGTATCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCGTATACCC
66 TCCCCAAATAATCATATGCATCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCATATACCC
* * *
6278 AAAATTG-GTTTTAAACGTGCTTTAATCCATA-TT-TTCATCCTAATTAATTGAATAAACCCCAT
131 AAAATTGACTTTAAAACGTGCTTTAATCCATATTTATTCATCCTAATTAATTAAATAAACCCCAT
* *
6340 CCATATGAATTTAGTGCCATATAGTAAT
196 CAATATGAATTTAGTGCCATATAATAAT
* * * * * *
6368 TAAATAAAATGCAAAATTCAGCATCCCCAAACTGATATATTTTATACCCAAATAATTTCTCATCA
1 TAAACAAAATGCAAAATTCAGTATCCCCAAAATAATATACTTTATACCCAAATCATTTCTCATCA
* * * *
6433 TCCCTAGATAATCATATGCATCATCCCCAAATTCTTTAGAGATTCACATTTTTTCTTATATACCC
66 TCCCCAAATAATCATATGCATCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCATATACCC
6498 AAAA
131 AAAA
6502 GTATCCCCAA
Statistics
Matches: 318, Mismatches: 34, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
220 170 0.53
222 2 0.01
224 60 0.19
225 37 0.12
226 49 0.15
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.35
Consensus pattern (223 bp):
TAAACAAAATGCAAAATTCAGTATCCCCAAAATAATATACTTTATACCCAAATCATTTCTCATCA
TCCCCAAATAATCATATGCATCATCCCCAAATTCTTTAGAGATTGACATTTTTTCTCATATACCC
AAAATTGACTTTAAAACGTGCTTTAATCCATATTTATTCATCCTAATTAATTAAATAAACCCCAT
CAATATGAATTTAGTGCCATATAATAAT
Found at i:8238 original size:4 final size:4
Alignment explanation
Indices: 8229--8253 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8219 ATGTTAAAGA
8229 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
8254 TAAAAATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:10210 original size:30 final size:30
Alignment explanation
Indices: 10176--10357 Score: 273
Period size: 30 Copynumber: 6.1 Consensus size: 30
10166 GGGTGCTCTT
10176 ATCCAAATACTCATCTGTTTTGCTGCTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTAC
*
10206 ATCCAAATATTCA-CATGTTTTGCCTG-TTAC
1 ATCCAAATACTCATC-TGTTTTG-CTGCTTAC
10236 ATCCAAATACTCATCTGTTTTGCTGCTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTAC
*
10266 ATCCAAATATTCA-CATGTTTTGCCTG-TTAC
1 ATCCAAATACTCATC-TGTTTTG-CTGCTTAC
10296 ATCCAAATACTCATCTGTTTTGCTGCTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTAC
*
10326 ATCCAAATACTCATCTGTTTTGATGCTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTAC
10356 AT
1 AT
10358 TTGCTATTTT
Statistics
Matches: 139, Mismatches: 5, Indels: 16
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.06
30 123 0.88
31 8 0.06
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (30 bp):
ATCCAAATACTCATCTGTTTTGCTGCTTAC
Found at i:10357 original size:60 final size:60
Alignment explanation
Indices: 10176--10347 Score: 319
Period size: 60 Copynumber: 2.9 Consensus size: 60
10166 GGGTGCTCTT
10176 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCACATGTTTTGCCTGTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCACATGTTTTGCCTGTTAC
10236 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCACATGTTTTGCCTGTTAC
1 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCACATGTTTTGCCTGTTAC
*
10296 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATACTCATC-TGTTTTG
1 ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCA-CATGTTTTG
10348 ATGCTTACAT
Statistics
Matches: 110, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
60 109 0.99
61 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (60 bp):
ATCCAAATACTCATCTGTTTTGCTGCTTACATCCAAATATTCACATGTTTTGCCTGTTAC
Found at i:11397 original size:239 final size:239
Alignment explanation
Indices: 10897--14725 Score: 5890
Period size: 239 Copynumber: 16.0 Consensus size: 239
10887 TTTCAACCAA
* ** * * *
10897 CCGAGAAACTTGAATGCTTCTATCCAAATACTCATCTATTATACCACTTACATCTGCAATTTCCA
1 CCGA-AAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCA
*
10962 GATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * * *
11027 AACAAGAATATAAAGAAAAAAATTCTACCTGTGACCGGCTTCAGCCCATTTTCAACCATACCAGA
130 GACATGAATATAAAG-AAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
**
11092 AACTTGAGCACTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
*
11138 CCAAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
** *
11203 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATAAAGCCATAAAAAATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * *
11268 AAATGAATATAAAGAAAAAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAG
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
*
11333 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGGCGCTTGAT
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * *
11377 CCGAAAACTTGAGTGCCCCTATCCAAATACTCATTTGTTATCCCGCTGACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* *
11442 ATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* *
11507 ACAT-AATTACAAAGAAA-AATTTCTACCTTTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
131 ACATGAA-TATAAAGAAAGAA-TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
11570 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
*
11616 CCGAAAACTTGATTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
*
11681 ATGAAAGTTGTATAAGTAGCGAGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* *
11746 ACATGAATATAAAGAAAGAATTCTACTTGTGACCGGTTTCAGCCCATTTTCAATCATACCAGAAA
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
* * * *
11811 CTTGAGTGCTCTTATCCAAATATTCATCTGTTATATCGCTTGAT
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * *
11855 CTGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* * *
11920 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACAAATATGGCCAAAAAAACAATTT
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCC-ATAAAACATTTT
* * * **
11985 GACATGAATATAAAGAAAGAATTCTACCTTTGACTGGTTTCAGCCCATTTTCTACCATTTCAGAA
130 GACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* * *
12050 GCTTGAGTGTTCCTATCCAAATATTCATCTGTTATGGCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * *
12095 CTGAAAACTTGACTGCCCCTATCCAAATACTCATTTGTTATCCCGGTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
** * * *
12160 ATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGCAGCAGATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * * *
12225 ACATAAATAAAAAGAAAGAAATTCTACCTGTGACAGGTTTAAGCCCATTTTCAACCATACCGGAA
131 ACATGAATATAAAGAAAG-AATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
12290 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * * * *
12335 CCGGAAAGTTGACTGCCCCTAT-CAAGATACTCATCTGTTTTCCGGCTTACATCTGTAATTTCCA
1 CCGAAAACTTGACTGCCCCTATCCAA-ATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCA
*
12399 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAATATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * *
12464 GACATGAATATAAAGAGAGAATTCTATCTGTGACCGGTTTCAGCCTATTTTCAACCATACCAGAA
130 GACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
*
12529 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTTGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
**
12574 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATTACGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
12639 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAAACATTTT
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCAT-AAAACATTTT
* *
12704 GACATGAATATAAAGAAAGAATTCTACTTGTGACCGATTTCAGCCCATTTTCAACCATACCAGAA
130 GACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
** *
12769 GGTTTAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * * * * * *
12814 CCGAGAACTTGACTGCCCCTATCCTAATACTCATCTTTTATCCCACTGACATCTACAATTTTCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
** * *
12879 ATGAAAGTTGTATAAGTAATGGGAAATAATGAAGTTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* *
12944 ACACGAATATAAAGAAA-AATTTCTACCTTTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
131 ACATGAATATAAAGAAAGAA-TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* *
13008 ACTTGAGCGTTCCTATCCAAATATTCATCAGTTATGTCACTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * *
13053 CCGAAAACATGATTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
** * *
13118 ATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGCAACAGATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * *
13183 ACATGAATAAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACTATACCGGAA
131 ACATGAAT-ATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* *
13248 ATTTGAGTGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * * * * *
13293 CCGGAAAGTCGACTGCCCCTATCCAAATACTCATCTGTTATTCGGTTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* * *
13358 ATGAAAGTTGTATAAGTAGCGTGAAACAATGAAATTAACAACATATATGGCCATAAAATATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * *
13423 ATATGAATATAAAGTAAGAATTCTATCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
13488 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* *
13532 CCGGAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCTCGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
*
13597 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGACCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * * *
13662 ACATGAATATAAAGAACA-ATTTGTACCTTTGACCGGTTTCAACCCATTTTCAACCATACTAGAA
131 ACATGAATATAAAGAA-AGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
*
13726 ACTTGAGCGTTCCTATCCAAATATTCATCGGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* *
13771 CCGAAAACTTGACTGTCCCTATCCAAATACTCATCTGTT-TCCCCGGTTACATCTGCAATTTCCA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTAT-CCCGCTTACATCTGCAATTTCCA
** * *
13835 AATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGGAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * * * *
13900 GACATGAATAAAAAGAAAGATTTCTACCTGTGACAGGTTTCTGCCCATTTTCAACCATACCGGAA
130 GACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
13965 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * * * *
14010 CCGGAAAGTTGACTGCCCTTATCCAAATACCCATCTGTTATCCGGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* *
14075 ATGAAAGTTGTTTAAGTAGCGCGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * *
14140 ACATGAATATGAAGAAAGAATTCTACCTGTGATCGGTTTCAGCCCATTTTCAATCATACCAGAAA
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
14205 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * *
14249 CTGAAAACTTGACTGCCCCTATCCAAATACTCATCTATTATCCCACTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* *
14314 ATGAAAGTTGTATAAGTAGCGGGAAACAACGAAATTAGCAACATATATGGCTATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * * *
14379 ACATGAATATAAAGAAAAAATTCTACTTTGTGACCGGTTTCAGCTCATTTTTAACTATACCAGAA
131 ACATGAATATAAAGAAAGAATTCTAC-CTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* *
14444 ACTTGAGCGCTCCTATCCAAATATGCATCTGTTATGTCGCTTGAT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
* * * *
14489 CCGAAAACTTGACTACCCCTATCCAAATATTCATCTGTTATCTCGTTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
* * *
14554 ATGAAAGTTGTATAAGTGGCGGGAAATAATGAAATTAGCAACATATATTGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * **
14619 ACATGAATATAAAGAAAGAATTCTACCTGTGACCAGTTTCAGCCTATTTTCAACCACATTAGAAA
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
* * *
14684 CTTGAGCGCTT-CTATCGAAATATTCATATGTTATGTTGCTTG
196 CTTGAGCG-TTCCTATCCAAATATTCATCTGTTATGTCGCTTG
14726 TATCTGCTAT
Statistics
Matches: 3265, Mismatches: 305, Indels: 38
0.90 0.08 0.01
Matches are distributed among these distances:
238 8 0.00
239 2046 0.63
240 1206 0.37
241 5 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (239 bp):
CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGAT
Found at i:12224 original size:479 final size:478
Alignment explanation
Indices: 10897--14725 Score: 5878
Period size: 479 Copynumber: 8.0 Consensus size: 478
10887 TTTCAACCAA
* ** * *
10897 CCGAGAAACTTGAATGCTTCTATCCAAATACTCATCTATTATACCACTTACATCTGCAATTTCCA
1 CCGA-AAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCA
*
10962 GATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * * *
11027 AACAAGAATATAAAGAAAAAAATTCTACCTGTGACCGGCTTCAGCCCATTTTCAACCATACCAGA
130 GACATGAATATAAAG-AAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
** *
11092 AACTTGAGCACTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCAAAAACTTGACTGCCCC
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCC
11157 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
259 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
** * * *
11222 CGGGAAACAATGAAATTAGCAACATATAAAGCCATAAAAAATTTTGAAATGAATATAAAGAAAAA
324 CGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGA
*
11287 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAA
389 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAA
*
11352 ATATTCATCTGTTATGGCGCTTGAT
454 ATATTCATCTGTTATGTCGCTTGAT
* * *
11377 CCGAAAACTTGAGTGCCCCTATCCAAATACTCAT-TTGTTATCCCGCTGACATCTGCAATTTCCA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTT-TTATCCCACTTACATCTGCAATTTCCA
* *
11441 AATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* *
11506 GACAT-AATTACAAAGAAA-AATTTCTACCTTTGACCGGTTTCAGCCCATTTTCAACCATACCAG
130 GACATGAA-TATAAAGAAAGAA-TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAG
*
11569 AAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGATTGCCC
193 AAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCC
11634 CTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTA
258 CTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTA
*
11699 GCGAGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAG
323 GCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAG
* * * * *
11764 AATTCTACTTGTGACCGGTTTCAGCCCATTTTCAATCATACCAGAAACTTGAGTGCTCTTATCCA
388 AATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCA
*
11829 AATATTCATCTGTTATATCGCTTGAT
453 AATATTCATCTGTTATGTCGCTTGAT
*
11855 CTGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
* * *
11920 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACAAATATGGCCAAAAAAACAATTT
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCC-ATAAAACATTTT
* * * **
11985 GACATGAATATAAAGAAAGAATTCTACCTTTGACTGGTTTCAGCCCATTTTCTACCATTTCAGAA
130 GACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* * * *
12050 GCTTGAGTGTTCCTATCCAAATATTCATCTGTTATGGCGCTTGATCTGAAAACTTGACTGCCCCT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCT
* * **
12115 ATCCAAATACTCATTTGTTATCCCGGTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAAT
260 ATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
* * * * *
12180 GGGAAATAATGAAATTAGCAGCAGATATGGCCATAAAACATTTTGACATAAATAAAAAGAAAGAA
325 GGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAG-A
* * *
12245 ATTCTACCTGTGACAGGTTTAAGCCCATTTTCAACCATACCGGAAACTTGAGCGTTCCTATCCAA
389 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAA
12310 ATATTCATCTGTTATGTCGCTTGAT
454 ATATTCATCTGTTATGTCGCTTGAT
* * ** *
12335 CCGGAAAGTTGACTGCCCCTAT-CAAGATACTCATCTGTTT-TCCGGCTTACATCTGTAATTTCC
1 CCGAAAACTTGACTGCCCCTATCCAA-ATACTCATCT-TTTATCCCACTTACATCTGCAATTTCC
*
12398 AAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAATATTT
64 AAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTT
* * *
12463 TGACATGAATATAAAGAGAGAATTCTATCTGTGACCGGTTTCAGCCTATTTTCAACCATACCAGA
129 TGACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
*
12528 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTTGCTTGATCCGAAAACTTGACTGCCCC
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCC
**
12593 TATCCAAATACTCATCTGTTATTACGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
259 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
12658 CGGGAAACAATGAAATTAGCAACATATATGGCCATAAAAACATTTTGACATGAATATAAAGAAAG
324 CGGGAAACAATGAAATTAGCAACATATATGGCCAT-AAAACATTTTGACATGAATATAAAGAAAG
* * ** *
12723 AATTCTACTTGTGACCGATTTCAGCCCATTTTCAACCATACCAGAAGGTTTAGCGTTCCTATCCA
388 AATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCA
12788 AATATTCATCTGTTATGTCGCTTGAT
453 AATATTCATCTGTTATGTCGCTTGAT
* * * * *
12814 CCGAGAACTTGACTGCCCCTATCCTAATACTCATCTTTTATCCCACTGACATCTACAATTTTCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
** * *
12879 ATGAAAGTTGTATAAGTAATGGGAAATAATGAAGTTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* *
12944 ACACGAATATAAAGAAA-AATTTCTACCTTTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
131 ACATGAATATAAAGAAAGAA-TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* * * *
13008 ACTTGAGCGTTCCTATCCAAATATTCATCAGTTATGTCACTTGATCCGAAAACATGATTGCCCCT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCT
* **
13073 ATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAAT
260 ATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
* * *
13138 GGGAAATAATGAAATTAGCAACAGATATGGCCATAAAACATTTTGACATGAATAAAAAAGAAAGA
325 GGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAAT-ATAAAGAAAGA
* * * * *
13203 ATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACTATACCGGAAATTTGAGTGTTCCTATCCAA
389 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAA
13268 ATATTCATCTGTTATGTCGCTTGAT
454 ATATTCATCTGTTATGTCGCTTGAT
* * * * * ***
13293 CCGGAAAGTCGACTGCCCCTATCCAAATACTCATCTGTTATTCGGTTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
* * *
13358 ATGAAAGTTGTATAAGTAGCGTGAAACAATGAAATTAACAACATATATGGCCATAAAATATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * *
13423 ATATGAATATAAAGTAAGAATTCTATCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
131 ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
*
13488 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGGAAACTTGACTGCCCCTA
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTA
*
13553 TCCAAATACTCATCTGTTATCTCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
261 TCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
* *
13618 GGAAACAATGAAATTAGCAACATATATGACCATAAAACATTTTGACATGAATATAAAGAACA-AT
326 GGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAA-AGAA
* * * *
13682 TTGTACCTTTGACCGGTTTCAACCCATTTTCAACCATACTAGAAACTTGAGCGTTCCTATCCAAA
390 TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAA
*
13747 TATTCATCGGTTATGTCGCTTGAT
455 TATTCATCTGTTATGTCGCTTGAT
* *
13771 CCGAAAACTTGACTGTCCCTATCCAAATACTCATCTGTT-TCCC-CGGTTACATCTGCAATTTCC
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCAC--TTACATCTGCAATTTCC
** * *
13834 AAATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGGAACATATATGGCCATAAAACATTT
64 AAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTT
* * * * *
13899 TGACATGAATAAAAAGAAAGATTTCTACCTGTGACAGGTTTCTGCCCATTTTCAACCATACCGGA
129 TGACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGA
* * *
13964 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGGAAAGTTGACTGCCCT
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCC
* * *
14029 TATCCAAATACCCATCTGTTATCCGGCTTACATCTGCAATTTCCAAATGAAAGTTGTTTAAGTAG
259 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
* *
14094 CGCGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATGAAGAAAGA
324 CGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGA
* *
14159 ATTCTACCTGTGATCGGTTTCAGCCCATTTTCAATCATACCAGAAACTTGAGCGTTCCTATCCAA
389 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAA
14224 ATATTCATCTGTTATGTCGCTTGAT
454 ATATTCATCTGTTATGTCGCTTGAT
* *
14249 CTGAAAACTTGACTGCCCCTATCCAAATACTCATCTATTATCCCACTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
* *
14314 ATGAAAGTTGTATAAGTAGCGGGAAACAACGAAATTAGCAACATATATGGCTATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * * *
14379 ACATGAATATAAAGAAAAAATTCTACTTTGTGACCGGTTTCAGCTCATTTTTAACTATACCAGAA
131 ACATGAATATAAAGAAAGAATTCTAC-CTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAA
* * *
14444 ACTTGAGCGCTCCTATCCAAATATGCATCTGTTATGTCGCTTGATCCGAAAACTTGACTACCCCT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCT
* * * *
14509 ATCCAAATATTCATCTGTTATCTCGTTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTGGC
260 ATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
* *
14574 GGGAAATAATGAAATTAGCAACATATATTGCCATAAAACATTTTGACATGAATATAAAGAAAGAA
325 GGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGAA
* * * ** *
14639 TTCTACCTGTGACCAGTTTCAGCCTATTTTCAACCACATTAGAAACTTGAGCGCTT-CTATCGAA
390 TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCG-TTCCTATCCAA
* *
14703 ATATTCATATGTTATGTTGCTTG
454 ATATTCATCTGTTATGTCGCTTG
14726 TATCTGCTAT
Statistics
Matches: 3036, Mismatches: 289, Indels: 49
0.90 0.09 0.01
Matches are distributed among these distances:
477 5 0.00
478 1102 0.36
479 1700 0.56
480 226 0.07
481 3 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (478 bp):
CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAA
ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
ACATGAATATAAAGAAAGAATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAA
CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTA
TCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
GGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGAAT
TCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAAT
ATTCATCTGTTATGTCGCTTGAT
Found at i:13533 original size:718 final size:717
Alignment explanation
Indices: 10897--14725 Score: 5919
Period size: 718 Copynumber: 5.3 Consensus size: 717
10887 TTTCAACCAA
* ** * * **
10897 CCGAGAAACTTGAATGCTTCTATCCAAATACTCATCTATTATACCACTTACATCTGCAATTTCCA
1 CCGA-AAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCA
*
10962 GATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * * * * *
11027 AACAAGAATATAAAGAAAAAAATTCTACCTGTGACCGGCTTCAGCCCATTTTCAACCATACCAGA
130 GACATGAATAAAAAG-AAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGA
** *
11092 AACTTGAGCACTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCAAAAACTTGACTGCCCC
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCC
11157 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
259 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
** * * *
11222 CGGGAAACAATGAAATTAGCAACATATAAAGCCATAAAAAATTTTGAAATGAATATAAAGAAAAA
324 CGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGA
11287 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAA
389 ATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAA
* *
11352 ATATTCATCTGTTATGGCGCTTGATCCGAAAACTTGAGTGCCCCTATCCAAATACTCAT-TTGTT
454 ATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTT-TT
*
11416 ATCCCGCTGACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGC
518 ATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGC
*
11481 AACATATATGGCCATAAAACATTTTGACAT-AATTACAAAGAAAAATTTCTACCTTTGACCGGTT
583 AACATATATGGCCATAAAACATTTTGACATGAA-TATAAAGAAAAATTTCTACCTTTGACCGGTT
11545 TCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCG
647 TCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCG
11610 CTTGAT
712 CTTGAT
* *
11616 CCGAAAACTTGATTGCCCCTATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
*
11681 ATGAAAGTTGTATAAGTAGCGAGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * *
11746 ACATGAATATAAAGAAAGAATTCTACTTGTGACCGGTTTCAGCCCATTTTCAATCATACCAGAAA
131 ACATGAATAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGAAA
* * * * *
11811 CTTGAGTGCTCTTATCCAAATATTCATCTGTTATATCGCTTGATCTGAAAACTTGACTGCCCCTA
196 CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTA
* *
11876 TCCAAATACTCATCTTTTATCCCACTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
261 TCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
* * *
11941 GGAAACAATGAAATTAGCAACAAATATGGCCAAAAAAACAATTTGACATGAATATAAAGAAAGAA
326 GGAAACAATGAAATTAGCAACATATATGGCC-ATAAAACATTTTGACATGAATATAAAGAAAGAA
* * * ** *
12006 TTCTACCTTTGACTGGTTTCAGCCCATTTTCTACCATTTCAGAAGCTTGAGTGTTCCTATCCAAA
390 TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAAA
* *
12071 TATTCATCTGTTATGGCGCTTGATCTGAAAACTTGACTGCCCCTATCCAAATACTCAT-TTGTTA
455 TATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTT-TTA
* *
12135 TCCCGGTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGCA
519 TCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCA
* * * * * * *
12200 GCAGATATGGCCATAAAACATTTTGACATAAATAAAAAGAAAGAAATTCTACCTGTGACAGGTTT
584 ACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAA-AATTTCTACCTTTGACCGGTTT
* *
12265 AAGCCCATTTTCAACCATACCGGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGC
648 CAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGC
12330 TTGAT
713 TTGAT
* * * *
12335 CCGGAAAGTTGACTGCCCCTAT-CAAGATACTCATCTGTT-TTCCGGCTTACATCTGTAATTTCC
1 CCGAAAACTTGACTGCCCCTATCCAA-ATACTCATCTGTTATCCCGG-TTACATCTGCAATTTCC
*
12398 AAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAATATTT
64 AAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTT
* * * * *
12463 TGACATGAATATAAAGAGAGAATTCTATCTGTGACCGGTTTCAGCCTATTTTCAACCATACCAGA
129 TGACATGAATAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGA
*
12528 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTTGCTTGATCCGAAAACTTGACTGCCCC
194 AACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCC
**
12593 TATCCAAATACTCATCTGTTATTACGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
259 TATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAG
12658 CGGGAAACAATGAAATTAGCAACATATATGGCCATAAAAACATTTTGACATGAATATAAAGAAAG
324 CGGGAAACAATGAAATTAGCAACATATATGGCCAT-AAAACATTTTGACATGAATATAAAGAAAG
* * * *
12723 AATTCTACTTGTGACCGATTTCAGCCCATTTTCAACCATACCAGAAGGTTTAGCGTTCCTATCCA
388 AATTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCA
* *
12788 AATATTCATCTGTTATGTCGCTTGATCCGAGAACTTGACTGCCCCTATCCTAATACTCATCTTTT
453 AATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTT
* * * * * *
12853 ATCCCACTGACATCTACAATTTTCAAATGAAAGTTGTATAAGTAATGGGAAATAATGAAGTTAGC
518 ATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGC
*
12918 AACATATATGGCCATAAAACATTTTGACACGAATATAAAGAAAAATTTCTACCTTTGACCGGTTT
583 AACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAAATTTCTACCTTTGACCGGTTT
* *
12983 CAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCAGTTATGTCAC
648 CAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGC
13048 TTGAT
713 TTGAT
* *
13053 CCGAAAACATGATTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
** * *
13118 ATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGCAACAGATATGGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* *
13183 ACATGAATAAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACTATACCGGAA
131 ACATGAAT-AAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGAA
* * * * *
13248 ATTTGAGTGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGGAAAGTCGACTGCCCCT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCT
* * *
13313 ATCCAAATACTCATCTGTTATTCGGTTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
260 ATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
* * * * *
13378 GTGAAACAATGAAATTAACAACATATATGGCCATAAAATATTTTGATATGAATATAAAGTAAGAA
325 GGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGAA
* *
13443 TTCTATCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAA
390 TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAAA
* *
13508 TATTCATCTGTTATGTCGCTTGATCCGGAAACTTGACTGCCCCTATCCAAATACTCATCTGTTAT
455 TATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTAT
* * *
13573 CTCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAA
520 CCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCAA
* * *
13638 CATATATGACCATAAAACATTTTGACATGAATATAAAGAACAATTTGTACCTTTGACCGGTTTCA
585 CATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAAATTTCTACCTTTGACCGGTTTCA
* * *
13703 ACCCATTTTCAACCATACTAGAAACTTGAGCGTTCCTATCCAAATATTCATCGGTTATGTCGCTT
650 GCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTT
13768 GAT
715 GAT
*
13771 CCGAAAACTTGACTGTCCCTATCCAAATACTCATCTGTT-TCCCCGGTTACATCTGCAATTTCCA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTAT-CCCGGTTACATCTGCAATTTCCA
** * *
13835 AATGAAAGTTGTATAAGTAATGGGAAATAATGAAATTAGGAACATATATGGCCATAAAACATTTT
65 AATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTT
* * *
13900 GACATGAATAAAAAGAAAGATTTCTACCTGTGACAGGTTTCTGCCCATTTTCAACCATACCGGAA
130 GACATGAATAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGAA
* * *
13965 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGGAAAGTTGACTGCCCTT
195 ACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCT
* * *
14030 ATCCAAATACCCATCTGTTATCCGGCTTACATCTGCAATTTCCAAATGAAAGTTGTTTAAGTAGC
260 ATCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGC
* *
14095 GCGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATGAAGAAAGAA
325 GGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGAA
* * *
14160 TTCTACCTGTGATCGGTTTCAGCCCATTTTCAATCATACCAGAAACTTGAGCGTTCCTATCCAAA
390 TTCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAAA
* *
14225 TATTCATCTGTTATGTCGCTTGATCTGAAAACTTGACTGCCCCTATCCAAATACTCATCTATTAT
455 TATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTAT
* * * *
14290 CCCACTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCGGGAAACAACGAAATTAGCAA
520 CCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCAA
* * *
14355 CATATATGGCTATAAAACATTTTGACATGAATATAAAGAAAAAATTCTACTTTGTGACCGGTTTC
585 CATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAAATTTCTACCTT-TGACCGGTTTC
* * * * *
14420 AGCTCATTTTTAACTATACCAGAAACTTGAGCGCTCCTATCCAAATATGCATCTGTTATGTCGCT
649 AGCCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCT
14485 TGAT
714 TGAT
* * * *
14489 CCGAAAACTTGACTACCCCTATCCAAATATTCATCTGTTATCTCGTTTACATCTGCAATTTCCAA
1 CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
* * *
14554 ATGAAAGTTGTATAAGTGGCGGGAAATAATGAAATTAGCAACATATATTGCCATAAAACATTTTG
66 ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
* * * **
14619 ACATGAATATAAAGAAAGAATTCTACCTGTGACCA-GTTTCAGCCTATTTTCAACCACATTAGAA
131 ACATGAATAAAAAGAAAGAATTCTACCTGTGA-CAGGTTTCAGCCCATTTTCAACCATACCAGAA
* * *
14683 ACTTGAGCGCTT-CTATCGAAATATTCATATGTTATGTTGCTTG
195 ACTTGAGCG-TTCCTATCCAAATATTCATCTGTTATGTCGCTTG
14726 TATCTGCTAT
Statistics
Matches: 2863, Mismatches: 232, Indels: 31
0.92 0.07 0.01
Matches are distributed among these distances:
717 665 0.23
718 1327 0.46
719 869 0.30
720 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (717 bp):
CCGAAAACTTGACTGCCCCTATCCAAATACTCATCTGTTATCCCGGTTACATCTGCAATTTCCAA
ATGAAAGTTGTATAAGTAGCGGGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTG
ACATGAATAAAAAGAAAGAATTCTACCTGTGACAGGTTTCAGCCCATTTTCAACCATACCAGAAA
CTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTA
TCCAAATACTCATCTGTTATCCCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGCG
GGAAACAATGAAATTAGCAACATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAGAAT
TCTACCTGTGACCGGTTTCAGCCCATTTTCAACCATACCAGAAGCTTGAGCGTTCCTATCCAAAT
ATTCATCTGTTATGTCGCTTGATCCGAAAACTTGACTGCCCCTATCCAAATACTCATCTTTTATC
CCGCTTACATCTGCAATTTCCAAATGAAAGTTGTATAAGTAGTGGGAAATAATGAAATTAGCAAC
ATATATGGCCATAAAACATTTTGACATGAATATAAAGAAAAATTTCTACCTTTGACCGGTTTCAG
CCCATTTTCAACCATACCAGAAACTTGAGCGTTCCTATCCAAATATTCATCTGTTATGTCGCTTG
AT
Found at i:16742 original size:13 final size:13
Alignment explanation
Indices: 16724--16751 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16714 TCAACAAAGT
16724 TGACAGTGTATTG
1 TGACAGTGTATTG
16737 TGACAGTGTATTG
1 TGACAGTGTATTG
16750 TG
1 TG
16752 GCAAGGTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.32, T:0.39
Consensus pattern (13 bp):
TGACAGTGTATTG
Found at i:19390 original size:2 final size:2
Alignment explanation
Indices: 19383--19426 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
19373 ATATGTAGAG
* * *
19383 TA TA TA TA TA TA TA TA TA TA TA TA -A AA TT TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19424 TA T
1 TA T
19427 GAAAAAACTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19415 original size:21 final size:22
Alignment explanation
Indices: 19391--19431 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
19381 AGTATATATA
19391 TATATATATATATAT-AAAATT
1 TATATATATATATATGAAAATT
*
19412 TATATTTATATATATGAAAA
1 TATATATATATATATGAAAA
19432 AACTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
TATATATATATATATGAAAATT
Found at i:19990 original size:19 final size:19
Alignment explanation
Indices: 19948--19991 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
19938 GTTATTAGTT
*
19948 AAGAGAGTGAGTATGAAGA
1 AAGAGAGTGAGTAGGAAGA
* * *
19967 GAGAGAGTGAGTGGGGAGA
1 AAGAGAGTGAGTAGGAAGA
19986 AAGAGA
1 AAGAGA
19992 ATAGGGGCAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.11
Consensus pattern (19 bp):
AAGAGAGTGAGTAGGAAGA
Found at i:22780 original size:18 final size:18
Alignment explanation
Indices: 22757--22795 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
22747 ATGTATAAAT
22757 TTTTATTGATTCAAATAA
1 TTTTATTGATTCAAATAA
* *
22775 TTTTATTTATTTAAATAA
1 TTTTATTGATTCAAATAA
22793 TTT
1 TTT
22796 CATTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTATTGATTCAAATAA
Found at i:22804 original size:18 final size:18
Alignment explanation
Indices: 22769--22804 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22759 TTATTGATTC
* *
22769 AAATAATTTTATTTATTT
1 AAATAATTTCATTAATTT
22787 AAATAATTTCATTAATTT
1 AAATAATTTCATTAATTT
22805 TATTGTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
AAATAATTTCATTAATTT
Found at i:23352 original size:18 final size:18
Alignment explanation
Indices: 23329--23363 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23319 TGCATAAATG
23329 TTTATTGATTCAAATAAA
1 TTTATTGATTCAAATAAA
* *
23347 TTTATTTATTTAAATAA
1 TTTATTGATTCAAATAA
23364 TGTAATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTATTGATTCAAATAAA
Found at i:25950 original size:20 final size:18
Alignment explanation
Indices: 25895--25944 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
25885 GATGATATTG
*
25895 TTTTTATAATTGTTGGTT
1 TTTTTCTAATTGTTGGTT
25913 TTTTTCTAATTGTTGGTT
1 TTTTTCTAATTGTTGGTT
25931 TTTTTCTAATTGTT
1 TTTTTCTAATTGTT
25945 TTGGTTAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.14, C:0.04, G:0.14, T:0.68
Consensus pattern (18 bp):
TTTTTCTAATTGTTGGTT
Found at i:36961 original size:18 final size:18
Alignment explanation
Indices: 36938--36972 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36928 TGTATAAATT
36938 TTTATTGATTCAAATAAA
1 TTTATTGATTCAAATAAA
* *
36956 TTTATTTATTTAAATAA
1 TTTATTGATTCAAATAA
36973 TCTCATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTATTGATTCAAATAAA
Found at i:38493 original size:18 final size:18
Alignment explanation
Indices: 38470--38504 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38460 TGTATAAATT
38470 TTTATTGATTGAAATAAA
1 TTTATTGATTGAAATAAA
* *
38488 TTTATTTATTTAAATAA
1 TTTATTGATTGAAATAA
38505 TCTCATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTATTGATTGAAATAAA
Found at i:45448 original size:18 final size:18
Alignment explanation
Indices: 45425--45459 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45415 TGTATAAATT
45425 TTTATTGATTCAAATAAA
1 TTTATTGATTCAAATAAA
* *
45443 TTTATTTATTTAAATAA
1 TTTATTGATTCAAATAA
45460 TCTCTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTATTGATTCAAATAAA
Found at i:46778 original size:18 final size:18
Alignment explanation
Indices: 46755--46789 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46745 TGTATAAATT
46755 TTTATTGATTCAAATAAA
1 TTTATTGATTCAAATAAA
* *
46773 TTTATTTATTTAAATAA
1 TTTATTGATTCAAATAA
46790 TCTCATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTATTGATTCAAATAAA
Found at i:48931 original size:23 final size:23
Alignment explanation
Indices: 48905--48949 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
48895 AAGGCTATTG
48905 ATATA-TACAAT-TAAAAATTAA
1 ATATATTACAATATAAAAATTAA
**
48926 ATATATTATTATATAAAAATTAA
1 ATATATTACAATATAAAAATTAA
48949 A
1 A
48950 AAATGATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 4 0.20
23 11 0.55
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATATTACAATATAAAAATTAA
Found at i:48958 original size:22 final size:23
Alignment explanation
Indices: 48916--48959 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
48906 TATATACAAT
* *
48916 TAAAAATTAAATATATTATTATA
1 TAAAAATTAAATAAATGATTATA
48939 TAAAAATTAAA-AAATGATTAT
1 TAAAAATTAAATAAATGATTAT
48960 TACTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAAAATTAAATAAATGATTATA
Found at i:51905 original size:138 final size:138
Alignment explanation
Indices: 51657--51931 Score: 505
Period size: 138 Copynumber: 2.0 Consensus size: 138
51647 TAATATATAC
* *
51657 TATATATTATTTTTAGTGACTATGGAAATTACTTAAAGGTCAAATTGAGGATTAATGTGGTGCCT
1 TATATATTATTTTTAGTGACTATGGAAATTACTTAAAGGCCAAATTGAGGATTAATGTGGTGCCA
* * *
51722 CCTTTTGGTTTTTTTTGGTCTTTTCTCACTTTTCGGGTGACTAAAAACGCCCTCGATGAATTTCC
66 CCTTTTGGCTTTTTTTGGTCTTTTCTCACTTTTCGGGTGACTAAAAACGCCATCGATGAATATCC
51787 TCCCTTAT
131 TCCCTTAT
51795 TATATATTATTTTTAGTGACTATGGAAATTACTTAAAGGCCAAATTGAGGATTAATGTGGTGCCA
1 TATATATTATTTTTAGTGACTATGGAAATTACTTAAAGGCCAAATTGAGGATTAATGTGGTGCCA
51860 CCTTTTGGCTTTTTTTGGTCTTTTCTCACTTTTCGGGTGACTAAAAACGCCATCGATGAATATCC
66 CCTTTTGGCTTTTTTTGGTCTTTTCTCACTTTTCGGGTGACTAAAAACGCCATCGATGAATATCC
51925 TCCCTTA
131 TCCCTTA
51932 CTTTTCCTAC
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 132 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (138 bp):
TATATATTATTTTTAGTGACTATGGAAATTACTTAAAGGCCAAATTGAGGATTAATGTGGTGCCA
CCTTTTGGCTTTTTTTGGTCTTTTCTCACTTTTCGGGTGACTAAAAACGCCATCGATGAATATCC
TCCCTTAT
Found at i:56870 original size:178 final size:178
Alignment explanation
Indices: 56566--56895 Score: 486
Period size: 178 Copynumber: 1.9 Consensus size: 178
56556 TAAATGCAAA
* * *
56566 TTATGTAATATTAAGTAGACCGTCTATTTCCCTTAACTGAAACAACTAATTCTTTGGAAGCATTT
1 TTATATAATATTAAGTAGACCGTCTATTTCCCTTAACTGAAACAACAAATTCTTTGGAAGCATAT
* *
56631 TTCATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTTGTAGATCATGGAACAAC
66 TTCATACCTTGAACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATGGAACAAC
*
56696 CTTTCAAGAGACACTTGAATCATCTCAATTAGACAAATGGAGCAAAAG
131 CTTTCAAGAGACACTTAAATCATCTCAATTAGACAAATGGAGCAAAAG
* * *
56744 TTATATAATATTAAGTGGACTGTCTA-TTCCCGTTAACTGAAACAACAAATT-TTTCGGATGCAT
1 TTATATAATATTAAGTAGACCGTCTATTTCCC-TTAACTGAAACAACAAATTCTTT-GGAAGCAT
* *
56807 ATTTGATA-CTTGAAACATTAAATTTAATTTTCGAGTCCTACATGAAAGTTGTAGATCATGGAAC
64 ATTTCATACCTTG-AACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATGGAAC
* * *
56871 AATCTTTTAATAGACACTTAAATCA
128 AACCTTTCAAGAGACACTTAAATCA
56896 CCTTAATCGG
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
177 12 0.09
178 123 0.91
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (178 bp):
TTATATAATATTAAGTAGACCGTCTATTTCCCTTAACTGAAACAACAAATTCTTTGGAAGCATAT
TTCATACCTTGAACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATGGAACAAC
CTTTCAAGAGACACTTAAATCATCTCAATTAGACAAATGGAGCAAAAG
Found at i:56928 original size:178 final size:177
Alignment explanation
Indices: 56563--56944 Score: 475
Period size: 178 Copynumber: 2.1 Consensus size: 177
56553 CCATAAATGC
* * *
56563 AAATTATGTAATATTAAGTAGACCGTCTATTTCCCTTAACTGAAACAACTAATTCTTTGGAAGCA
1 AAATTATATAATATTAAGTAGACTGTCTATTTCCCTTAACTGAAACAACAAATTCTTTGGAAGCA
* * *
56628 TTTTTCATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTTGTAGATCATGGAAC
66 TATTTCATACCTTGAACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATGGAAC
* * * **
56693 AACCTTTCAAGAGACACTTGAATCATCTCAATTAGACAAATGGAGCA
131 AACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAAAAAGAGCA
* *
56740 AAAGTTATATAATATTAAGTGGACTGTCTA-TTCCCGTTAACTGAAACAACAAATT-TTTCGGAT
1 AAA-TTATATAATATTAAGTAGACTGTCTATTTCCC-TTAACTGAAACAACAAATTCTTT-GGAA
* *
56803 GCATATTTGATA-CTTGAAACATTAAATTTAATTTTCGAGTCCTACATGAAAGTTGTAGATCATG
63 GCATATTTCATACCTTG-AACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATG
* * * * * *
56867 GAACAATCTTTTAATAGACACTTAAATCACCTTAATCGGATAACCAAAGAG-A
127 GAACAACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAA--AAAGAGCA
* *
56919 AAATTATATAATGTTAAATAGACTGT
1 AAATTATATAATATTAAGTAGACTGT
56945 TTAGTCAAAC
Statistics
Matches: 175, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
177 15 0.09
178 152 0.87
179 4 0.02
180 4 0.02
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (177 bp):
AAATTATATAATATTAAGTAGACTGTCTATTTCCCTTAACTGAAACAACAAATTCTTTGGAAGCA
TATTTCATACCTTGAACATTAAATTTAATTTTCAAGTCCTACATGAAAGTTGTAGATCATGGAAC
AACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAAAAAGAGCA
Found at i:57461 original size:55 final size:55
Alignment explanation
Indices: 57395--57505 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
57385 TGTGTTTCCT
57395 TTTCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTC
1 TTTCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTC
57450 TTTCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTC
1 TTTCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTC
57505 T
1 T
57506 ACAAAATAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (55 bp):
TTTCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTC
Found at i:57635 original size:42 final size:42
Alignment explanation
Indices: 57570--57650 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
57560 TAAGGATCAG
57570 GATTTGAGTTGAGTATTGCTTAATTTACAAAGAATTTTCTAT
1 GATTTGAGTTGAGTATTGCTTAATTTACAAAGAATTTTCTAT
**
57612 GATTTGAGTTGAGTATTTTTTAATTTACAAAGAATTTTC
1 GATTTGAGTTGAGTATTGCTTAATTTACAAAGAATTTTC
57651 AAGACTTAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (42 bp):
GATTTGAGTTGAGTATTGCTTAATTTACAAAGAATTTTCTAT
Found at i:58415 original size:18 final size:17
Alignment explanation
Indices: 58384--58417 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
58374 CACTTGTTAA
*
58384 TAATTAAAATTAAATCC
1 TAATTAAAACTAAATCC
58401 TAATGTAAAACTAAATC
1 TAAT-TAAAACTAAATC
58418 TATTCCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAAACTAAATCC
Found at i:66446 original size:30 final size:30
Alignment explanation
Indices: 66411--66500 Score: 153
Period size: 30 Copynumber: 3.0 Consensus size: 30
66401 TATTTTTATC
*
66411 TTGACTTTCCTCTTATACCCTCAAATTTTA
1 TTGACTTTTCTCTTATACCCTCAAATTTTA
**
66441 TTGACTTTTCTCTTATACTTTCAAATTTTA
1 TTGACTTTTCTCTTATACCCTCAAATTTTA
66471 TTGACTTTTCTCTTATACCCTCAAATTTTA
1 TTGACTTTTCTCTTATACCCTCAAATTTTA
66501 ATGGTTTATT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.23, C:0.22, G:0.03, T:0.51
Consensus pattern (30 bp):
TTGACTTTTCTCTTATACCCTCAAATTTTA
Found at i:67833 original size:14 final size:14
Alignment explanation
Indices: 67814--67842 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67804 GCGATCAGTA
67814 CATTAAATATTAAT
1 CATTAAATATTAAT
67828 CATTAAATATTAAT
1 CATTAAATATTAAT
67842 C
1 C
67843 CGAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (14 bp):
CATTAAATATTAAT
Found at i:68911 original size:164 final size:161
Alignment explanation
Indices: 68640--68964 Score: 596
Period size: 164 Copynumber: 2.0 Consensus size: 161
68630 TCTATAAATG
68640 GAAAACTGGATTTGCTTGAAACATATTATATCATCTAAATTGTAAAGCTTGCTTATATAATGTCT
1 GAAAACTGGATTTGCTTGAAACATATTATATCATCTAAATTGTAAAGCTTGCTTATATAATGTCT
*
68705 ACTGTTTAAAAACATACAATACCTAAATGATTAACCTATTTTTTTATCTAGTATCACAAAAATTA
66 ACTGTTTAAAAACATACAATACCTAAATGATTAACCTA--TTTTTATCTAATATCAC-AAAATTA
68770 AAGTCTACGCCAATTGGAGAAAATAATTGCATGT
128 AAGTCTACGCCAATTGGAGAAAATAATTGCATGT
*
68804 GAAAACTGGATTTGCTTGAAACATATTATATCATCTAAATTGTAAAGCTTGTTTATATAATGTCT
1 GAAAACTGGATTTGCTTGAAACATATTATATCATCTAAATTGTAAAGCTTGCTTATATAATGTCT
*
68869 ACTGTTTAAGAACATACAATACCTAAATGATTAACCTATTTTTATCTAATATCACAAAATTAAAG
66 ACTGTTTAAAAACATACAATACCTAAATGATTAACCTATTTTTATCTAATATCACAAAATTAAAG
68934 TCTACGCCAATTGGAGAAAATAATTGCATGT
131 TCTACGCCAATTGGAGAAAATAATTGCATGT
68965 TTTAAGCCAT
Statistics
Matches: 158, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
161 41 0.26
162 16 0.10
164 101 0.64
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (161 bp):
GAAAACTGGATTTGCTTGAAACATATTATATCATCTAAATTGTAAAGCTTGCTTATATAATGTCT
ACTGTTTAAAAACATACAATACCTAAATGATTAACCTATTTTTATCTAATATCACAAAATTAAAG
TCTACGCCAATTGGAGAAAATAATTGCATGT
Done.