Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001895.1 Corchorus olitorius cultivar O-4 contig01895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30


Found at i:950 original size:68 final size:68

Alignment explanation


    Indices: 869--1006  Score: 258
    Period size: 68  Copynumber: 2.0  Consensus size: 68

        859 TGCTTGCTTC

                  *                                                          
        869 TTGTCGGCAATTTTCCTCCAAAAATTTTCTTCTTGTTGATGAAGAGTACCGTCGGTTTGCTTGCA
          1 TTGTCGACAATTTTCCTCCAAAAATTTTCTTCTTGTTGATGAAGAGTACCGTCGGTTTGCTTGCA

               
        934 AAT
         66 AAT

                                                         *                   
        937 TTGTCGACAATTTTCCTCCAAAAATTTTCTTCTTGTTGATGAAGATTACCGTCGGTTTGCTTGCA
          1 TTGTCGACAATTTTCCTCCAAAAATTTTCTTCTTGTTGATGAAGAGTACCGTCGGTTTGCTTGCA

               
       1002 AAT
         66 AAT

              
       1005 TT
          1 TT

       1007 TCCTCCAAAA


Statistics
Matches: 68,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  68   68  1.00

ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41


Consensus pattern (68 bp):   
TTGTCGACAATTTTCCTCCAAAAATTTTCTTCTTGTTGATGAAGAGTACCGTCGGTTTGCTTGCA
AAT
Done.