Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018950.1 Corchorus olitorius cultivar O-4 contig18983, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60903

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3831--3865
17
2.1
17
100
0
70
34
20
11
34
1.88
6837--6864
9
3.1
9
100
0
56
32
57
0
10
1.33
10801--11070
72
3.8
71
79
2
245
24
17
30
27
1.97
13643--13701
31
1.9
31
100
0
118
15
44
16
23
1.86
14626--14854
117
2.0
117
95
1
415
33
24
8
33
1.85
16541--16839
22
13.3
21
67
17
104
38
11
16
34
1.84
16539--16752
111
1.9
111
82
1
268
39
12
13
35
1.82
16730--16783
26
2.1
26
85
0
72
29
11
29
29
1.91
16920--17024
22
4.8
23
74
8
69
40
10
9
39
1.72
16950--17024
22
3.4
22
79
0
87
44
8
8
40
1.63
17007--17042
18
2.0
18
94
0
63
36
11
13
38
1.81
19943--20093
84
1.8
84
81
4
191
27
11
21
39
1.88
26276--26302
13
2.1
13
100
0
54
37
7
29
25
1.83
30168--30218
22
2.2
24
83
16
72
41
0
0
58
0.98
30168--30216
25
2.0
25
84
8
64
40
0
0
59
0.98
30636--30732
32
3.0
32
98
0
185
29
30
7
31
1.84
38270--38298
3
9.7
3
100
0
58
0
34
0
65
0.93
42801--42948
77
1.9
75
87
2
215
23
33
17
25
1.96
42801--42936
38
3.6
38
89
2
202
24
34
16
24
1.95
46368--46413
21
2.2
21
88
0
65
39
6
21
32
1.79
47921--47954
1
34.0
1
93
0
59
0
2
0
97
0.19
50313--50354
19
2.2
19
95
0
75
21
26
14
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54140--54195
27
2.1
26
86
3
76
51
10
8
28
1.66
54158--54237
40
2.0
40
100
0
160
50
10
10
30
1.69
55667--55721
3
18.3
3
92
0
92
29
0
0
70
0.87
59840--59915
22
3.5
22
89
3
111
22
21
15
40
1.90
59925--60090
22
7.1
22
72
21
124
23
19
14
42
1.88

Tables:   1

The End!