Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018951.1 Corchorus olitorius cultivar O-4 contig18984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1695
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40


Found at i:19 original size:6 final size:6

Alignment explanation


    Indices: 9--59  Score: 57
    Period size: 6  Copynumber: 8.5  Consensus size: 6

          1 TAGTATAA

                                 *         *      *      *      *  
          9 ATAGAT ATAGAT ATAGAT GTAGAT ATATAT ATATAT ATATAT ATATAT
          1 ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT

               
         57 ATA
          1 ATA

         60 TAAGAATTGA


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41


Consensus pattern (6 bp):   
ATAGAT

Found at i:38 original size:2 final size:2

Alignment explanation


    Indices: 31--61  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

         21 ATAGATGTAG

                                                          
         31 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         62 AGAATTGAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.